Gene omics information

Query gene ID	GmaAffx.56409.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.56409.1.S1_at	BU965321	-	-	1e-16	At1g08750	GPI-anchor transamidase, putative	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.27367.1.S1_at	BG653618	-	-	7e-9	At1g79690	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	S.X.	H.G.	Please select
0.43	60.6	Gma.8209.1.S1_at	BU546771	-	-	2e-47	At5g58100	unknown protein	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.87924.1.S1_at	AW596893	-	-	9e-39	At3g05000	transport protein particle (TRAPP) component Bet3 family protein	S.X.	H.G.	Please select
0.35	48.6	Gma.17905.2.S1_at	CD393233	-	-	8e-37	At4g01320	ATSTE24	S.X.	H.G.	Please select
0.26	33.9	GmaAffx.90062.1.S1_s_at	CF805787	-	-	1e-108	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	97.0	GSM293601	31_2069.2B.R213L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM293595	26_2077.2B.R246U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293333	22_1549.1Q.R078L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293589	20_2073.2B.R308L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM293346	34_1550.1Q.R078P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM293605	35_2091.2B.R298U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM293377	62_1573.1Q.R160L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM293604	34_2072.2B.R303P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM293594	25_2056.2B.R020P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	7e-25	115	GmaAffx.61457.1.A1_at	CD405281	-	-	1e-2	At3g13500	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	38	HgAffx.11892.1.S1_at	CB935147	-	-	5e+0	At1g77330	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	C.G.	S.X.	Please select
0.03	1e-1	38	Gma.6307.1.S1_at	CD406411	-	-	4e-110	At5g46210	CUL4 (CULLIN4)	C.G.	S.X.	Please select
0.03	5e-1	36	GmaAffx.59248.1.S1_at	BG726776	-	-	2e-4	At4g22200	AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3)	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.CL2168Contig1_at	PsAffx.CL2168Contig1	-	-	1e+0	At1g14180	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C54000012_at	PsAffx.C54000012	-	-	7e+0	At5g44840	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.88007.1.A1_at	BU547057	-	-	1e+0	At3g16880	F-box protein-related	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.2637.1.S1_at	CA935422	-	-	2e+0	At5g23535	KOW domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.10683.3.S1_at	BG839298	-	-	2e-46	At4g02230	60S ribosomal protein L19 (RPL19C)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	1e-16	87	Arabidopsis thaliana	At1g08750	837397	GPI-anchor transamidase, putative	F:GPI-anchor transamidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPOFAB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	3e-15	81	Hordeum vulgare	Contig12976_at	Contig12976	-	-	2e-84	At1g08750	GPI-anchor transamidase, putative	C.G.	S.X.	Please select
0.10	8e-10	65	Oryza sativa	Os02g0219400	AK072526.1	-	GPI-anchor transamidase precursor (EC 3.-.-.-)(GPI transamidase) (Phosphatidylinositol-glycanbiosynthesis, class K protein) (PIG-K) (hGPI8)	2e-109	At1g08750	GPI-anchor transamidase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	2e-12	73	Populus trichocarpa	Ptp.7815.1.A1_at	CX185861	hypothetical protein	-	1e-1	At2g19360	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	2e-18	93	Triticum aestivum	TaAffx.111071.1.S1_at	CA648523	-	-	3e+0	At5g58340	DNA binding	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1619737_at	BQ799058	hypothetical protein LOC100252379	-	4e+0	At5g05670	signal recognition particle binding	C.G.	S.X.	Please select
0.08	7e-10	63	Zea mays	Zm.15417.1.S1_at	AY110018.1	hypothetical protein LOC100273218	-	7e-97	At1g08750	GPI-anchor transamidase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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