Gene omics information

Query gene ID	GmaAffx.56390.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.56390.1.S1_at	BU927504	-	-	9e-7	At3g10530	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.42	59.3	Gma.6121.3.S1_at	BM885917	-	-	3e-4	At1g31970	STRS1 (STRESS RESPONSE SUPPRESSOR 1)	S.X.	H.G.	Please select
0.17	21.2	Gma.2819.2.S1_at	BG510963	-	-	4e-16	At1g72550	tRNA synthetase beta subunit family protein	S.X.	H.G.	Please select
0.06	9.0	GmaAffx.8247.1.S1_at	AW311073	-	-	1e+0	At4g30680	MA3 domain-containing protein	S.X.	H.G.	Please select
0.04	7.0	Gma.2422.2.S1_at	CF922564	-	-	1e-44	At5g05010	clathrin adaptor complexes medium subunit-related	S.X.	H.G.	Please select
0.02	4.5	GmaAffx.92769.1.S1_s_at	CF808494	-	-	1e-75	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.5	99.1	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
6.9	98.8	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
6.6	98.7	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
6.5	98.7	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
6.3	98.6	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM293049	51_C020.1N.R9N1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM294447	16_2526.2K.R230P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.1	98.1	GSM292208	70_C004.1A.R9A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	40	Gma.3309.1.S1_at	BE821442	-	-	7e+0	At5g48655	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e-1	36	PsAffx.C225000017_at	PsAffx.C225000017	-	-	1e+1	At5g10970	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C18000110_at	PsAffx.C18000110	-	-	5e-1	At1g49760	PAB8 (POLY(A) BINDING PROTEIN 8)	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.77678.1.S1_at	BM108233	ubiquitin carrier protein 4	-	2e-42	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.28968.1.S1_at	BU546617	-	-	3e-1	At3g12955	auxin-responsive protein-related	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.20339.1.S1_at	BI700796	-	-	1e+0	At1g11970	-	C.G.	S.X.	Please select
0.03	1e+0	34	Gma.3233.1.S1_s_at	M64267.1	Fe-superoxide dismutase	-	6e-13	At4g25100	FSD1 (FE SUPEROXIDE DISMUTASE 1)	C.G.	S.X.	Please select
0.03	1e+0	34	Gma.3233.1.S1_at	M64267.1	Fe-superoxide dismutase	-	6e-13	At4g25100	FSD1 (FE SUPEROXIDE DISMUTASE 1)	C.G.	S.X.	Please select
0.04	5e+0	32	PsAffx.psMA012xI02f_at	PsAffx.psMA012xI02f	-	-	1e-2	At5g67270	ATEB1C (microtubule end binding protein 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	9e-7	54	Arabidopsis thaliana	At3g10530	820218	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMFOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	32	Hordeum vulgare	EBro08_SQ003_F16_at	EBro08_SQ003_F16	-	-	6e-1	At3g48800	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os03g0684300	AK102497.1	-	Conserved hypothetical protein	7e+0	At2g39540	gibberellin-regulated family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	1e-40	167	Populus trichocarpa	PtpAffx.209444.1.S1_at	pmrna18709	hypothetical protein	-	3e-28	At3g10530	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.83962.1.S1_at	CA647257	-	-	3e+0	At1g78995	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1611863_at	CB344118	-	-	2e-1	At4g15510	photosystem II reaction center PsbP family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zea mays	Zm.1175.1.A1_at	BE511813	-	-	3e-1	At1g53625	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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