CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.55686.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 91.9 GmaAffx.55686.1.S1_at BI970602 - - 7e-7 At5g43560 meprin and TRAF homology domain-containing protein / MATH domain-containing protein S.X. H.G.
0.71 87.8 GmaAffx.93627.1.S1_s_at CF809352 - - 2e-44 At5g18620 CHR17 (CHROMATIN REMODELING FACTOR17) S.X. H.G.
0.71 87.8 Gma.8340.1.S1_at AW201258 - - 3e-3 At1g72390 unknown protein S.X. H.G.
0.47 66.6 Gma.12601.1.S1_at CD392236 - - 6e-50 At5g67320 HOS15 (high expression of osmotically responsive genes 15) S.X. H.G.
0.38 53.3 Gma.13522.1.S1_at AW101034 - - 8e-2 At5g11040 - S.X. H.G.
0.37 51.7 Gma.5056.1.S1_at BI970673 - - 1e-2 At3g22170 FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3) S.X. H.G.
0.35 48.6 GmaAffx.56338.1.S1_at BU765079 - - 2e-37 At5g13010 EMB3011 (embryo defective 3011) S.X. H.G.
0.35 48.6 Gma.8652.1.A1_at CD407809 - - 3e-1 At1g48160 signal recognition particle 19 kDa protein, putative / SRP19, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.8 98.7 GSM309343 transgenic RNAiOleosin, biol rep 1, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
6.2 98.6 GSM309344 transgenic RNAiOleosin, biol rep 1, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon
5.9 98.5 GSM309528 storage protein suppression expt, control tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
5.1 98.1 GSM309341 Wild type 1 GSE12300 Suppression of oleosin in soybean cotyledon
5.0 98.0 GSM292768 30_C198.1K.R9K3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7 97.8 GSM294133 87_2304.2G.R142P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM309346 transgenic RNAiOleosin, biol rep 2, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon
4.6 97.7 GSM309342 Wild type 2 GSE12300 Suppression of oleosin in soybean cotyledon
4.6 97.7 GSM292575 85_C136.1H.R9H2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 1e-107 391 Gma.13188.1.A1_at CD405092 - - 4e+0 At3g55750 60S ribosomal protein L35a (RPL35aD) C.G. S.X.
0.57 4e-43 176 Gma.10727.1.S1_at CD395758 - - 6e-1 At5g01580 OSH1 (OAS HIGH ACCUMULATION 1) C.G. S.X.
0.01 2e-1 38 PsAffx.C3000063_at PsAffx.C3000063 - - 1e+0 At2g30424 TCL2 (TRICHOMELESS 2) C.G. S.X.
0.02 9e-1 36 GmaAffx.92880.1.S1_s_at CF808605 peroxisomal voltage-dependent anion-selective channel protein - 4e-10 At3g01280 VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) C.G. S.X.
0.02 9e-1 36 GmaAffx.40748.1.S1_at BG352434 - - 2e-1 At1g68795 CLE12 (CLAVATA3/ESR-RELATED 12) C.G. S.X.
0.01 9e-1 36 Gma.6456.1.S1_at BG509157 Peroxisomal voltage-dependent anion-selective channel protein - 3e-6 At3g01280 VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) C.G. S.X.
0.01 4e+0 34 PsAffx.C46000015_at PsAffx.C46000015 - - 2e+0 At3g44783 unknown protein C.G. S.X.
0.01 4e+0 34 PsAffx.C21000050_at PsAffx.C21000050 - - 9e+0 At4g18620 - C.G. S.X.
0.02 4e+0 34 HgAffx.23160.2.S1_s_at CB379380 - - 4e-1 At3g05120 GID1A (GA INSENSITIVE DWARF1A) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-7 56 Arabidopsis thaliana At5g43560 834376 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA - - - C.G. S.X.
0.02 5e+0 32 Hordeum vulgare HW06A08u_s_at HW06A08u - - 2e-10 At3g29360 UDP-glucose 6-dehydrogenase, putative C.G. S.X.
0.01 3e-1 38 Oryza sativa Os03g0393900 AK069809.1 - Patatin-like protein 1 5e-2 At5g43590 patatin, putative C.G. S.X.
0.13 2e-5 52 Populus trichocarpa PtpAffx.147937.1.S1_at CK107561 hypothetical protein - 5e-3 At5g43560 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.30716.1.S1_at CA622683 - - 3e+0 At5g27880 zinc finger (C2H2 type) family protein C.G. S.X.
0.16 2e-16 85 Vitis vinifera 1615839_at BQ798166 hypothetical protein LOC100247786 - 3e-9 At1g04300 - C.G. S.X.
0.03 2e-2 40 Zea mays Zm.13769.1.S1_at AY105621.1 - - 2e-1 At2g21820 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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