Gene omics information

Query gene ID	GmaAffx.55284.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.8	GmaAffx.55284.1.S1_at	BM108343	-	-	3e+0	At5g10390	histone H3	S.X.	H.G.	Please select
0.97	99.8	PsAffx.C68000072_at	PsAffx.C68000072	-	-	4e+0	At2g41410	calmodulin, putative	S.X.	H.G.	Please select
0.94	99.2	HgAffx.3013.1.S1_at	CK349173	-	-	3e-1	At1g66890	-	S.X.	H.G.	Please select
0.94	99.2	HgAffx.11003.1.S1_at	CB824101	-	-	4e+0	At3g28630	-	S.X.	H.G.	Please select
0.94	99.2	HgAffx.5776.1.S1_at	CB826435	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	S.X.	H.G.	Please select
0.91	98.6	PsAffx.C115000050_s_at	PsAffx.C115000050	-	-	2e+0	At5g66490	unknown protein	S.X.	H.G.	Please select
0.90	93.7	PsAffx.C63000067_at	PsAffx.C63000067	-	-	1e-1	At5g05150	AtATG18e	S.X.	H.G.	Please select
0.88	93.4	PsAffx.C177000015_at	PsAffx.C177000015	-	-	2e-1	At4g25150	acid phosphatase, putative	S.X.	H.G.	Please select
0.88	93.4	PsAffx.C6000193_at	PsAffx.C6000193	-	-	1e+1	Atmg00450	-	S.X.	H.G.	Please select
0.85	92.8	HgAffx.17742.1.S1_at	CB278735	-	-	1e+0	At5g05250	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
1440.4	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
47.1	99.9	GSM292696	44_C168.1J.SLJ1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
37.9	99.9	GSM292236	40_C023.1B.V7B1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
29.0	99.8	GSM293307	89_1202.1P.R124P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
26.8	99.8	GSM294541	14_3199.2L.R9L1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
22.0	99.8	GSM171666	26_V.E.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
20.5	99.7	GSM293156	67_C052.1O.V7O3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.5	99.7	GSM294031	81_2263.2F.R300U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.3	99.7	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.7	99.6	GSM244850	27_CON.I3L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	4e-31	135	PsAffx.CL537Contig1_at	PsAffx.CL537Contig1	-	-	2e-10	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	C.G.	S.X.	Please select
0.03	1e-3	44	PsAffx.CL1432Contig1_at	PsAffx.CL1432Contig1	-	-	2e+0	At5g53220	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C9000089_at	PsAffx.C9000089	-	-	8e-1	At5g22000	RHF2A (RING-H2 GROUP F2A)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C47000029_at	PsAffx.C47000029	-	-	3e-1	At3g25577	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	PsAffx.C23000123_at	PsAffx.C23000123	-	-	1e+0	At4g22210	LCR85 (Low-molecular-weight cysteine-rich 85)	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C218000016_at	PsAffx.C218000016	-	-	1e+1	At5g03460	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C21000093_at	PsAffx.C21000093	-	-	3e+0	At5g47880	ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1)	C.G.	S.X.	Please select
0.02	1e+0	34	GmaAffx.91106.1.S1_s_at	CF805636	-	-	1e-38	At3g21690	MATE efflux family protein	C.G.	S.X.	Please select
0.02	1e+0	34	GmaAffx.91106.1.S1_at	CF805636	-	-	1e-38	At3g21690	MATE efflux family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At5g10390	830903	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	7e-9	59	Hordeum vulgare	Contig1794_s_at	Contig1794	-	-	2e-155	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	C.G.	S.X.	Please select
0.09	1e-4	48	Oryza sativa	Os.54583.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	5e-6	52	Populus trichocarpa	PtpAffx.217978.1.S1_at	pmrna33469	-	-	4e+0	At5g15830	AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	9e-4	44	Triticum aestivum	Ta.1258.2.S1_x_at	BJ317864	S-adenosyl-L-homocysteine hydrolase	-	5e-13	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	C.G.	S.X.	Please select
0.05	2e-1	34	Vitis vinifera	1619097_a_at	CF213300	similar to HOG1 (HOMOLOGY-DEPENDENT GENE SILENCING 1); adenosylhomocysteinase	-	9e-140	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	C.G.	S.X.	Please select
0.03	1e+0	32	Zea mays	Zm.17960.1.A1_at	CK348236	hypothetical protein LOC100276613	-	6e+0	At5g62470	MYB96 (myb domain protein 96)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage