CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.55210.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 GmaAffx.55210.1.S1_at BE804778 - - 5e-1 At1g08650 PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE) S.X. H.G.
0.77 90.3 GmaAffx.68425.1.S1_at BI425905 - - 1e-35 At3g57650 LPAT2 S.X. H.G.
0.61 81.8 GmaAffx.58610.1.S1_at BF066199 - - 1e-2 At3g49430 SRp34a (Ser/Arg-rich protein 34a) S.X. H.G.
0.61 81.8 GmaAffx.56889.1.S1_s_at AW781023 - - 3e-7 At3g59380 FTA (FARNESYLTRANSFERASE A) S.X. H.G.
0.55 76.3 GmaAffx.29121.1.S1_at BU762958 - - 1e+0 At4g17310 unknown protein S.X. H.G.
0.55 76.3 Gma.7528.2.S1_at BM891312 - - 3e-49 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.1 97.3 GSM293613 42_2054.2B.R307P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8 97.0 GSM293307 89_1202.1P.R124P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM293594 25_2056.2B.R020P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293877 29_3084.2E.R9E2P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293390 74_1588.1Q.R230P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM294132 86_3112.2G.R9G1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM293890 40_2230.2E.R022P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM293526 42_2022.2A.R275P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM293879 30_2202.2E.R190P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM294405 62_3164.2J.SLJ1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-5 52 GmaAffx.55210.2.S1_at BE330623 - - 3e-32 At2g43070 protease-associated (PA) domain-containing protein C.G. S.X.
0.02 4e-2 40 GmaAffx.7874.1.S1_s_at BG551594 - - 7e-4 At4g39780 AP2 domain-containing transcription factor, putative C.G. S.X.
0.03 4e-2 40 Gma.3017.1.A1_at BM271434 - - 2e-2 At3g12650 unknown protein C.G. S.X.
0.02 2e-1 38 Gma.12989.1.S1_at AW306930 - - 2e-1 At1g76440 - C.G. S.X.
0.02 2e-1 38 Gma.12424.1.S1_s_at AW706222 - - 3e-2 At3g27010 AT-TCP20 C.G. S.X.
0.01 6e-1 36 PsAffx.C178000010_at PsAffx.C178000010 - - 7e-1 At5g23760 heavy-metal-associated domain-containing protein C.G. S.X.
0.02 3e+0 34 PsAffx.CL903Contig1_at PsAffx.CL903Contig1 - - 8e+0 At2g05786 unknown protein C.G. S.X.
0.01 3e+0 34 PsAffx.C34000033_at PsAffx.C34000033 - - 5e-1 At5g41630 F-box family protein C.G. S.X.
0.02 3e+0 34 HgAffx.2835.1.A1_at CK350233 - - 7e-2 At2g12875 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 Arabidopsis thaliana At1g08650 837387 PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE) Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light. - - - C.G. S.X.
0.03 9e-1 34 Hordeum vulgare HB04N02r_x_at HB04N02r - - 1e+1 At5g44570 unknown protein C.G. S.X.
0.02 9e-1 36 Oryza sativa OsAffx.29402.1.S1_at - - - 0 C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.217123.1.S1_s_at pmrna32266 hypothetical protein - 2e-1 At5g49120 senescence-associated protein-related C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.43796.1.S1_at BE492815 - - 9e+0 At5g47840 AMK2 (Adenosine monophosphate kinase) C.G. S.X.
0.03 8e+0 30 Vitis vinifera 1620701_at CF415290 - - 4e+0 At5g50930 DNA binding C.G. S.X.
0.02 3e+0 32 Zea mays Zm.3313.1.A1_a_at CK985862 - - 6e+0 At5g25840 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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