Gene omics information

Query gene ID	GmaAffx.54917.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	GmaAffx.54917.1.S1_at	AW666047	-	-	5e+0	At5g43440	2-oxoglutarate-dependent dioxygenase, putative	S.X.	H.G.	Please select
0.13	16.3	Gma.6903.1.A1_at	BE657510	-	-	1e+0	At4g33130	-	S.X.	H.G.	Please select
0.07	10.2	Gma.6780.2.S1_at	BQ786058	-	-	1e-45	At2g25910	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein	S.X.	H.G.	Please select
0.07	10.2	GmaAffx.29585.1.A1_at	CD397532	-	-	3e+0	At2g31730	ethylene-responsive protein, putative	S.X.	H.G.	Please select
0.04	7.0	GmaAffx.77010.1.S1_at	BE821775	-	-	2e-40	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	S.X.	H.G.	Please select
0.02	4.5	GmaAffx.46095.1.S1_at	BU544901	-	-	8e-8	At5g09320	VPS9B	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	97.5	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.2	96.0	GSM201107	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
2.8	95.1	GSM293885	36_2205.2E.R018L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM201112	Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
2.6	94.5	GSM292769	31_1405.1K.R251U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
2.3	93.3	GSM294423	79_2455.2J.R220L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM294680	50_3221.2M.R9M1U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM294030	80_2257.2F.R277U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM293298	80_1213.1P.R131L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.00	1e-1	38	PsAffx.C95000028_at	PsAffx.C95000028	-	-	1e+0	At2g27990	BLH8 (BEL1-LIKE HOMEODOMAIN 8)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C9000131_at	PsAffx.C9000131	-	-	8e+0	At5g36925	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.84774.1.S1_at	AW394807	-	-	2e-46	At5g16560	KAN (KANADI)	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C4000144_at	PsAffx.C4000144	-	-	5e-2	At4g02425	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	32	PsAffx.C38000096_at	PsAffx.C38000096	-	-	8e+0	At5g61110	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	7e+0	32	PsAffx.C259000012_s_at	PsAffx.C259000012	-	-	5e-1	At2g19810	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C225000001_at	PsAffx.C225000001	-	-	3e-1	At3g04945	LCR18 (Low-molecular-weight cysteine-rich 18)	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C2000330_at	PsAffx.C2000330	-	-	1e+0	At3g45820	unknown protein	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C127000004_at	PsAffx.C127000004	-	-	2e-1	At2g15025	beta-galactosidase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At5g43440	834364	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to ACC oxidase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	38	Hordeum vulgare	Contig549_x_at	Contig549	-	-	7e-3	At5g53590	auxin-responsive family protein	C.G.	S.X.	Please select
0.04	1e-2	42	Oryza sativa	Os05g0117600	9633.m00183	-	Hypothetical protein	4e-1	At2g40510	40S ribosomal protein S26 (RPS26A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	5e-41	169	Populus trichocarpa	PtpAffx.18601.1.A1_at	CV241338	hypothetical protein	-	4e-4	At3g46220	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	9e-2	38	Triticum aestivum	TaAffx.79503.1.S1_at	CA713943	-	-	4e+0	At5g50175	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1617229_s_at	CB975402	-	-	2e-1	At2g22520	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.15298.1.A1_at	BQ538208	-	-	1e+0	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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