Gene omics information

Query gene ID	GmaAffx.53048.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	93.4	GmaAffx.53048.1.S1_s_at	AW395589	-	-	2e-14	At1g66070	translation initiation factor-related	S.X.	H.G.	Please select
0.45	63.9	Gma.14954.1.S1_at	CD413469	-	-	5e-13	At3g05070	-	S.X.	H.G.	Please select
0.41	58.1	Gma.10779.2.S1_at	BU578186	-	-	2e-1	At1g55546	unknown protein	S.X.	H.G.	Please select
0.41	58.1	GmaAffx.93466.1.S1_s_at	CF809191	-	-	3e-10	At2g31305	INH3 (INHIBITOR-3)	S.X.	H.G.	Please select
0.40	57.1	Gma.15883.1.S1_s_at	AF255338.1	20S proteasome subunit	-	2e-86	At1g53850	PAE1	S.X.	H.G.	Please select
0.40	57.1	Gma.17742.1.S1_at	BF599092	-	-	1e-12	At4g29330	DER1 (DERLIN-1)	S.X.	H.G.	Please select
0.39	54.5	Gma.16051.1.S1_at	CD398111	-	-	6e-25	At3g04780	-	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.59019.1.S1_at	AW133348	-	-	1e-136	Atmg00160	-	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.91997.1.S1_s_at	CF807722	-	-	1e-62	At3g22950	ATARFC1 (ADP-ribosylation factor C1)	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.92081.1.S1_at	CF807806	-	-	1e-3	At1g47420	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.1	95.8	GSM293077	77_1077.1N.R046L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM292862	3_C201.1L.R9L1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM294048	97_2249.2F.R268L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
2.7	94.8	GSM244794	14_CON.I1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
2.6	94.5	GSM294033	83_3105.2F.R9F3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293112	27_C047.1O.R9O2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM294043	92_3107.2F.SLF3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM294423	79_2455.2J.R220L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM292892	67_1464.1L.R282P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	GmaAffx.92954.1.S1_at	CF808679	-	-	3e-7	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.92954.1.S1_x_at	CF808679	-	-	3e-7	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.03	3e-1	36	Gma.5623.1.S1_at	BI788222	-	-	3e-14	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C94000012_at	PsAffx.C94000012	-	-	4e-1	At2g44350	ATCS	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C59000080_at	PsAffx.C59000080	-	-	6e+0	At5g53470	ACBP1 (ACYL-COA BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.04	1e+0	34	HgAffx.18961.1.S1_at	CA940219	-	-	8e-1	Atmg00680	-	C.G.	S.X.	Please select
0.02	1e+0	34	GmaAffx.69102.1.S1_at	BQ786051	-	-	1e-1	At5g41030	TCP family transcription factor, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.8446.1.S1_at	AF350328.1	SHOOT2 protein	-	6e-23	At3g10040	transcription factor	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.6447.1.S1_at	AW350839	-	-	8e-6	At4g15885	kinesin motor protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-14	79	Arabidopsis thaliana	At1g66070	842921	translation initiation factor-related	F:molecular_function unknown;P:biological_process unknown;C:membrane;MFPOBAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	34	Hordeum vulgare	Contig10573_s_at	Contig10573	-	-	9e-12	At4g29520	-	C.G.	S.X.	Please select
0.06	3e-8	59	Oryza sativa	Os02g0122300	AK106553.1	-	Conserved hypothetical protein	1e-2	At1g66070	translation initiation factor-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	2e-27	123	Populus trichocarpa	PtpAffx.146121.1.S1_s_at	BU873543	hypothetical protein	-	9e-11	At5g37475	translation initiation factor-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	3e-13	75	Triticum aestivum	Ta.9351.1.S1_s_at	CK197291	-	-	1e-5	At5g37475	translation initiation factor-related	C.G.	S.X.	Please select
0.10	3e-22	103	Vitis vinifera	1618212_at	CB977905	hypothetical protein LOC100242541	-	2e-6	At5g37475	translation initiation factor-related	C.G.	S.X.	Please select
0.03	4e-1	34	Zea mays	Zm.18607.1.A1_at	CK826821	-	-	2e+0	At3g29720	transferase-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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