Gene omics information

Query gene ID GmaAffx.52566.1.S1_at
Gene name
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.6GmaAffx.52566.1.S1_atAI959822--2e-4At3g08950electron transport SCO1/SenC family proteinS.X.H.G.
0.1822.3GmaAffx.90838.1.S1_atCF806563--2e-42At1g0836060S ribosomal protein L10A (RPL10aA)S.X.H.G.
0.1417.5Gma.6820.1.S1_atAI416867--1e-13At1g03860ATPHB2 (PROHIBITIN 2)S.X.H.G.
0.1215.1Gma.2256.2.A1_atAW317212--1e-3At1g61570TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13)S.X.H.G.
0.035.8Gma.10577.1.S1_atCD416202--7e-49At1g23290RPL27ABS.X.H.G.
0.013.4GmaAffx.50033.1.S1_atBU550874--7e-18At3g57610ADSS (ADENYLOSUCCINATE SYNTHASE)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
16.499.6GSM245938Leaf_LCO treated_Rep 3_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
16.199.6GSM182029Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stage
14.099.6GSM182035Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stage
12.699.5GSM245935Leaf_Water Control_Rep 3_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
10.199.3GSM29295736_C233.1M.SLM3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.499.2GSM29428941_3149.2I.SLI1L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.199.2GSM245937Leaf_LCO treated_Rep 2_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.899.1GSM29400053_3091.2F.SLF1L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.599.1GSM29394590_3081.2E.SLE2L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.899.0GSM24483322_VP9.M1W1.CEL, Experimental replicate 1GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-344PsAffx.C185000014_atPsAffx.C185000014--7e-3At3g17170RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)C.G.S.X.
0.025e-342PsAffx.C6000146_atPsAffx.C6000146--2e-1At3g04360-C.G.S.X.
0.055e-342GmaAffx.86989.1.A1_atBI970551--6e-2At2g42040-C.G.S.X.
0.022e-240PsAffx.C17000018_atPsAffx.C17000018--4e-2At2g22430ATHB6C.G.S.X.
0.042e-240GmaAffx.82656.2.S1_s_atAI960985--2e-5At2g01100unknown proteinC.G.S.X.
0.037e-238PsAffx.C9000126_atPsAffx.C9000126--2e+0At1g63055unknown proteinC.G.S.X.
0.007e-238PsAffx.C73000080_atPsAffx.C73000080--7e-2At1g22110structural constituent of ribosomeC.G.S.X.
0.017e-238PsAffx.C38000122_atPsAffx.C38000122--2e-2At3g50550unknown proteinC.G.S.X.
0.047e-238PsAffx.C272000010_atPsAffx.C272000010--2e+0At3g44870S-adenosyl-L-methionine:carboxyl methyltransferase family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.052e-446Arabidopsis thalianaAt3g08950820046electron transport SCO1/SenC family proteinF:copper ion binding;P:copper ion transport, respiratory chain complex IV assembly, cellular copper ion homeostasis, cell redox homeostasis;C:mitochondrion, plastid;BOMFPA---C.G.S.X.
0.072e-342Hordeum vulgareHF21N04r_atHF21N04r--2e+0At4g19150ankyrin repeat family proteinC.G.S.X.
0.047e-342Oryza sativaOs12g0178800AK063709.1-Hypothetical protein3e-2At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)C.G.S.X.
0.062e-240Populus trichocarpaPtpAffx.76442.1.A1_atCV230385--2e-1At5g64905PROPEP3 (Elicitor peptide 3 precursor)C.G.S.X.
0.066e-238Triticum aestivumTaAffx.26908.1.S1_x_atCA683387--3e+0At4g32090galactosyltransferaseC.G.S.X.
0.056e-236Vitis vinifera1614489_atCB974585--9e-6At2g45960PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B)C.G.S.X.
0.072e-238Zea maysZmAffx.1083.1.A1_atAI974922--1e+0At1g59830PP2A-1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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