Gene omics information

Query gene ID	GmaAffx.49918.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.49918.1.S1_at	BG362868	-	-	3e-22	At4g02670	AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.66304.1.S1_at	AW164351	-	-	1e+0	At3g09710	IQD1 (IQ-DOMAIN 1)	S.X.	H.G.	Please select
0.50	71.7	Gma.4305.3.S1_a_at	BG044173	-	-	5e-8	At5g57940	ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.75287.1.S1_at	BM086047	-	-	2e-1	At4g01000	ubiquitin family protein	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.92146.1.S1_s_at	CF807871	-	-	2e-42	At2g29580	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.10	13.0	Gma.4995.2.S1_at	AW830184	-	-	3e-4	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.6	99.2	GSM293390	74_1588.1Q.R230P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3	98.6	GSM293000	75_C234.1M.SLM3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM293391	75_1578.1Q.R172P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM294237	86_3142.2H.SLH3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM294218	69_3140.2H.R9H3P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM293639	66_2084.2B.R288P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM293393	77_C086.1Q.SLQ3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM294197	4_3138.2H.R9H2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM293529	45_3018.2A.R9A3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM294571	41_3212.2L.R9L3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	5e-40	165	GmaAffx.83599.2.S1_at	CA936809	-	-	6e-11	At1g55110	AtIDD7 (Arabidopsis thaliana Indeterminate(ID)-Domain 7)	C.G.	S.X.	Please select
0.21	5e-34	145	GmaAffx.73708.1.S1_at	BF598075	-	-	3e-43	At3g45260	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.33	5e-31	135	PsAffx.psHB034xB01f_at	PsAffx.psHB034xB01f	-	-	3e-11	At1g14580	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.13	3e-17	89	GmaAffx.31406.1.A1_at	BQ080665	-	-	1e-13	At1g55110	AtIDD7 (Arabidopsis thaliana Indeterminate(ID)-Domain 7)	C.G.	S.X.	Please select
0.13	3e-17	89	GmaAffx.31406.1.S1_at	CA801582	-	-	1e-13	At1g55110	AtIDD7 (Arabidopsis thaliana Indeterminate(ID)-Domain 7)	C.G.	S.X.	Please select
0.08	1e-16	87	Gma.3419.2.S1_at	BE658641	-	-	1e-5	At1g03840	MGP (Magpie)	C.G.	S.X.	Please select
0.14	1e-10	67	GmaAffx.40916.1.S1_at	BM178806	-	-	3e-28	At1g14580	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.19	4e-7	56	GmaAffx.73708.3.S1_at	BM177743	-	-	9e-10	At5g03150	JKD (JACKDAW)	C.G.	S.X.	Please select
0.09	2e-5	50	GmaAffx.61166.1.S1_at	CA801722	-	-	6e-11	At1g55110	AtIDD7 (Arabidopsis thaliana Indeterminate(ID)-Domain 7)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	3e-22	105	Arabidopsis thaliana	At4g02670	828206	AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12)	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-1	34	Hordeum vulgare	Contig4697_s_at	Contig4697	-	-	4e+0	At2g31490	unknown protein	C.G.	S.X.	Please select
0.13	3e-27	123	Oryza sativa	Os01g0242200	AK107468.1	-	Zn-finger, C2H2 type domain containing protein	4e-9	At1g03840	MGP (Magpie)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	3e-32	139	Populus trichocarpa	PtpAffx.139060.1.S1_at	CN522335	hypothetical protein	-	3e-45	At1g55110	AtIDD7 (Arabidopsis thaliana Indeterminate(ID)-Domain 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	1e-33	143	Triticum aestivum	Ta.27378.1.S1_s_at	CA647282	-	-	9e-13	At1g14580	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.05	4e+0	30	Vitis vinifera	1620940_at	CF201899.1	-	-	2e+1	At5g66990	RWP-RK domain-containing protein	C.G.	S.X.	Please select
0.06	1e-1	36	Zea mays	Zm.372.1.S1_at	AF058757.1	indeterminate growth1	-	9e-7	At1g14580	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage