Gene omics information

Query gene ID	GmaAffx.4970.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.96	99.6	GmaAffx.4970.1.S1_at	BM085400	-	-	3e+0	At5g26070	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.52	73.1	Gma.13377.1.S1_at	CD408470	-	-	2e+0	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	S.X.	H.G.	Please select
0.46	65.5	Gma.13377.2.S1_a_at	CD409238	-	-	3e-2	At1g03600	photosystem II family protein	S.X.	H.G.	Please select
0.46	65.5	Gma.7331.1.S1_at	BU549815	-	-	6e-2	At4g28080	binding	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.43434.1.A1_at	AI938306	-	-	2e+0	At4g27040	VPS22	S.X.	H.G.	Please select
0.39	54.5	GmaAffx.11114.1.A1_at	BI968107	-	-	2e+0	At3g47543	unknown protein	S.X.	H.G.	Please select
0.39	54.5	Gma.15718.1.A1_at	CD399100	-	-	1e+0	At2g21060	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	S.X.	H.G.	Please select
0.39	54.5	Gma.13003.1.S1_s_at	CD401473	-	-	7e-3	At5g66800	unknown protein	S.X.	H.G.	Please select
0.39	54.5	Gma.13021.1.A1_at	CD397517	-	-	3e-11	At4g17260	L-lactate dehydrogenase, putative	S.X.	H.G.	Please select
0.39	54.5	Gma.17695.1.A1_at	CD411626	-	-	9e-1	At4g02530	chloroplast thylakoid lumen protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
661.7	100.0	GSM238057	Soybean-S03W4-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
235.0	100.0	GSM238030	Soybean-2601R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
200.7	100.0	GSM238059	Soybean-S03W4-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
151.1	100.0	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
119.7	100.0	GSM238034	Soybean-2601R-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
111.5	100.0	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
105.6	100.0	GSM238032	Soybean-2601R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
81.6	100.0	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
76.3	100.0	GSM238061	Soybean-S03W4-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
74.5	100.0	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	9e-1	34	Gma.11145.1.S1_at	CD417497	-	-	2e-23	At1g55860	UPL1 (UBIQUITIN-PROTEIN LIGASE 1)	C.G.	S.X.	Please select
0.04	4e+0	32	PsAffx.psML008xL20f_s_at	PsAffx.psML008xL20f	-	-	1e+1	At5g55570	unknown protein	C.G.	S.X.	Please select
0.00	4e+0	32	PsAffx.C7000010_at	PsAffx.C7000010	-	-	2e-2	At1g63650	EGL3 (ENHANCER OF GLABRA 3)	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C55000037_at	PsAffx.C55000037	-	-	3e-1	At4g23780	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C27000089_at	PsAffx.C27000089	-	-	2e-1	At5g63490	CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	C.G.	S.X.	Please select
0.00	4e+0	32	PsAffx.C243000003_at	PsAffx.C243000003	-	-	2e-2	At1g34790	TT1 (transparent testa 1)	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C137000043_at	PsAffx.C137000043	-	-	1e-1	At1g07040	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	32	HgAffx.19945.1.S1_at	CA939235	-	-	2e+0	At2g18400	ribosomal protein L6 family protein	C.G.	S.X.	Please select
0.05	4e+0	32	GmaAffx.262.1.S1_at	AW349426	-	-	8e-1	At3g15040	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e+0	32	Arabidopsis thaliana	At5g26070	832676	hydroxyproline-rich glycoprotein family protein	Encodes a protein with 23.5% proline residues and proline-rich extensin domains, INTERPRO:IPR002965; similar to root nodule extensin (Pisum sativum) gi:15021750/gb:AAK77902; Common family members: At5g19800, At5g57070, At1g72790 (Arabidopsis thaliana)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e+0	32	Hordeum vulgare	HU12F19u_at	HU12F19u	-	-	3e+0	At5g15560	unknown protein	C.G.	S.X.	Please select
Os09g0422700	0.02	5e+0	Oryza sativa	Os07g0648800	-	-	-	0			C.G.	S.X.	Please select
0.09	3e-16	85	Populus trichocarpa	PtpAffx.206540.1.S1_at	pmrna12974	hypothetical protein	-	8e-36	At4g28080	binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	32	Triticum aestivum	TaAffx.53095.1.S1_at	CA696728	-	-	2e+0	At2g18740	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	C.G.	S.X.	Please select
0.58	2e-7	54	Vitis vinifera	1611304_at	CB343069	hypothetical LOC100257033	-	7e-1	At3g46000	ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	Zm.4691.1.A1_at	AI734661	-	-	1e+0	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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