CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.49521.2.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 GmaAffx.49521.2.S1_at BF066739 - - 5e-34 At5g65780 ATBCAT-5 S.X. H.G.
0.07 10.2 GmaAffx.92033.1.S1_x_at CF807745 - - 3e-7 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) S.X. H.G.
0.04 7.0 GmaAffx.92033.1.S1_at CF807745 - - 3e-7 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) S.X. H.G.
0.02 4.5 GmaAffx.49521.1.S1_at AW348568 - - 1e-19 At5g65780 ATBCAT-5 S.X. H.G.
0.00 1.4 Gma.15133.2.S1_a_at BE803230 - - 5e-1 At4g13860 glycine-rich RNA-binding protein, putative S.X. H.G.
0.00 1.4 Gma.8323.2.S1_a_at BE805966 - - 9e-9 At5g19680 leucine-rich repeat family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 97.7 GSM293774 1_2189.2D.R167L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5 97.7 GSM292779 40_C183.1K.R9K1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM293885 36_2205.2E.R018L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2 97.4 GSM292699 47_1399.1J.R248U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1 97.3 GSM294133 87_2304.2G.R142P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1 97.3 GSM292675 25_1402.1J.R249P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM292678 28_1399.1J.R248L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM292720 66_C173.1J.R9J2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM292793 53_C197.1K.R9K3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM293915 63_2211.2E.R101L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 2e-151 535 GmaAffx.92033.1.S1_at CF807745 - - 3e-7 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
0.54 2e-151 535 GmaAffx.92033.1.S1_x_at CF807745 - - 3e-7 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
0.24 7e-40 165 GmaAffx.37955.1.A1_at BU548817 - - 8e-1 At3g23650 protein kinase-related C.G. S.X.
0.10 9e-21 101 GmaAffx.49521.1.S1_at AW348568 - - 1e-19 At5g65780 ATBCAT-5 C.G. S.X.
0.04 4e-1 36 GmaAffx.93561.1.S1_at CF807977 - - 3e-6 At1g10070 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) C.G. S.X.
0.04 4e-1 36 GmaAffx.84873.1.S1_at AW472165 - - 3e-11 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
0.04 4e-1 36 Gma.3405.1.S1_s_at AW350922 - - 3e-6 At1g10070 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) C.G. S.X.
0.03 2e+0 34 GmaAffx.82030.1.S1_at AW755868 - - 1e-2 At4g37810 unknown protein C.G. S.X.
0.03 7e+0 32 PsAffx.psHB003xO18f_at PsAffx.psHB003xO18f - - 2e+1 At5g49015 Expressed protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 5e-34 145 Arabidopsis thaliana At5g65780 836707 ATBCAT-5 encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant - - - C.G. S.X.
0.22 3e-24 111 Hordeum vulgare Contig8040_at Contig8040 - - 6e-11 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
0.23 9e-31 135 Oryza sativa Os05g0558400 AK072756.1 - Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3) 5e-24 At5g65780 ATBCAT-5 C.G. S.X.
0.39 3e-79 295 Populus trichocarpa PtpAffx.41318.1.S1_a_at CV265728 hypothetical protein - 3e-53 At5g65780 ATBCAT-5 C.G. S.X.
0.15 2e-2 40 Triticum aestivum TaAffx.129191.1.S1_at CD906345 - - 3e-5 At1g10070 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) C.G. S.X.
0.41 3e-23 107 Vitis vinifera 1622060_at BM436271 - - 3e-32 At5g65780 ATBCAT-5 C.G. S.X.
0.14 2e-28 125 Zea mays Zm.2520.1.A1_at AW400289 hypothetical protein LOC100191754 - 5e-21 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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