Gene omics information

Query gene ID	GmaAffx.4941.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.1	GmaAffx.4941.1.S1_at	BI971689	-	-	6e-1	At2g31170	SYCO ARATH	S.X.	H.G.	Please select
0.86	93.0	Gma.4927.1.S1_at	BG510284	-	-	7e-3	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select
0.78	90.6	GmaAffx.93103.1.S1_s_at	CF808828	-	-	5e-3	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select
0.69	86.8	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.92184.1.S1_s_at	CF807909	-	-	3e-1	At2g16900	-	S.X.	H.G.	Please select
0.67	86.1	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.63	82.9	GmaAffx.77778.1.S1_at	AW185540	-	-	5e+0	At5g52480	-	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.90789.1.S1_s_at	CF806514	-	-	1e+0	At5g58990	unknown protein	S.X.	H.G.	Please select
0.56	78.2	Gma.4927.2.S1_at	BM521060	-	-	2e-9	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select
0.47	66.6	GmaAffx.64029.1.S1_at	BQ627643	-	-	6e-2	At3g23680	F-box family protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.5	99.4	GSM292408	12_1265.1G.R168L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.1	99.4	GSM292510	26_1317.1H.R200L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.2	99.3	GSM292405	9_C101.1F.R9F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.2	99.3	GSM294272	26_2427.2I.R297L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.4	99.2	GSM292791	51_1403.1K.R250L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.9	99.2	GSM294687	57_2615.2M.R072L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.7	99.1	GSM294266	22_2417.2I.R236L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.7	99.1	GSM293887	38_2229.2E.R022L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.3	99.1	GSM293053	55_1057.1N.R033L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.2	99.0	GSM292518	33_1305.1H.R192L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	1e-18	93	GmaAffx.44066.1.S1_at	AW186424	-	-	2e-11	At4g12070	unknown protein	C.G.	S.X.	Please select
0.06	2e-1	36	GmaAffx.2662.1.A1_at	AW278269	-	-	3e+0	At5g66180	-	C.G.	S.X.	Please select
0.02	2e-1	36	Gma.2250.1.S1_at	AW132218	-	-	7e-4	At2g15290	TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)	C.G.	S.X.	Please select
0.04	9e-1	34	GmaAffx.82659.1.S1_at	CA784117	-	-	2e-11	At5g11040	-	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C69000053_at	PsAffx.C69000053	-	-	5e+0	At3g54130	josephin family protein	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C62000079_at	PsAffx.C62000079	-	-	5e-1	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C41000031_at	PsAffx.C41000031	-	-	5e+0	At2g28370	-	C.G.	S.X.	Please select
0.03	4e+0	32	PsAffx.C150000043_at	PsAffx.C150000043	-	-	2e+0	At3g02340	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	4e+0	32	HgAffx.21355.2.S1_at	CB825652	-	-	4e+0	Atcg01040	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	Arabidopsis thaliana	At2g31170	817673	SYCO ARATH	F:cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMAFPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e+0	30	Hordeum vulgare	Contig16295_at	Contig16295	-	-	3e-1	At3g01740	-	C.G.	S.X.	Please select
0.03	1e+0	34	Oryza sativa	Os09g0488700	AK062303.1	-	-	7e-4	At4g12070	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-1	36	Populus trichocarpa	PtpAffx.114565.1.A1_at	CV256466	hypothetical protein	-	1e-7	At4g12070	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	Ta.27797.2.S1_at	CA737658	-	-	1e+0	At5g22580	-	C.G.	S.X.	Please select
0.03	3e+0	30	Vitis vinifera	1621692_at	BM437998	-	-	2e-2	At3g16900	unknown protein	C.G.	S.X.	Please select
0.05	4e+0	30	Zea mays	ZmAffx.368.1.A1_at	AI673859	arogenate dehydrogenase	-	1e-1	At5g21970	ubiquitin thiolesterase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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