Gene omics information

Query gene ID	GmaAffx.48644.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.48644.1.S1_at	AW620338	-	-	9e-13	At5g19740	peptidase M28 family protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.84404.1.S1_at	BG238613	-	-	4e-6	At4g07670	protease-associated (PA) domain-containing protein	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.84199.1.S1_at	AW201276	-	-	3e-22	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.78058.1.S1_at	BF423924	-	-	2e-14	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	S.X.	H.G.	Please select
0.19	23.7	GmaAffx.25724.1.S1_at	AW432668	-	-	3e+0	At3g27040	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.03	5.8	GmaAffx.77903.1.S1_at	BE611583	-	-	1e-47	At2g35390	ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.2	99.7	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
18.1	99.7	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
16.6	99.6	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
13.0	99.5	GSM170927	Rust Innoculated, biological rep2	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
12.7	99.5	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
12.2	99.5	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
11.2	99.4	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
9.4	99.2	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
9.1	99.2	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.5	99.1	GSM170924	V2 Control, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e-15	83	GmaAffx.84404.1.S1_at	BG238613	-	-	4e-6	At4g07670	protease-associated (PA) domain-containing protein	C.G.	S.X.	Please select
0.04	7e-2	38	GmaAffx.92907.1.S1_at	CF808632	-	-	3e+0	At4g10300	-	C.G.	S.X.	Please select
0.03	7e-2	38	GmaAffx.23953.1.S1_s_at	BE658262	-	-	6e+0	At4g10300	-	C.G.	S.X.	Please select
0.04	1e+0	34	HgAffx.19783.1.S1_at	CB378425	-	-	2e-2	At5g26040	HDA2	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.5924.1.S1_at	BU544701	-	-	1e+0	At5g57230	-	C.G.	S.X.	Please select
0.04	5e+0	32	HgAffx.6750.1.S1_at	CB825462	-	-	2e-2	At4g00390	transcription regulator	C.G.	S.X.	Please select
0.04	5e+0	32	HgAffx.23646.1.S1_at	BF014203	-	-	6e-1	At3g45740	hydrolase family protein / HAD-superfamily protein	C.G.	S.X.	Please select
0.04	5e+0	32	HgAffx.13925.1.S1_at	CB374008	-	-	9e-1	At5g62998	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	32	GmaAffx.80717.1.S1_at	BE058825	-	-	7e-36	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	9e-13	73	Arabidopsis thaliana	At5g19740	832094	peptidase M28 family protein	F:dipeptidase activity;P:proteolysis;C:vacuole;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	32	Hordeum vulgare	Contig9338_at	Contig9338	-	-	2e-11	At5g65110	ACX2 (ACYL-COA OXIDASE 2)	C.G.	S.X.	Please select
0.10	7e-3	42	Oryza sativa	Os01g0743300	AK069026.1	-	Protease-associated PA domain containing protein	2e-2	At3g54720	AMP1 (ALTERED MERISTEM PROGRAM 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	3e-4	46	Populus trichocarpa	PtpAffx.22300.1.S1_at	CF228629	hypothetical protein	-	5e-7	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e-6	52	Triticum aestivum	Ta.27238.1.S1_at	BT009569.1	-	-	3e-8	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1621958_at	CF203054.1	hypothetical protein LOC100263890	-	4e-6	At3g12685	-	C.G.	S.X.	Please select
0.04	9e-2	36	Zea mays	Zm.15390.1.A1_at	BM267333	hypothetical protein LOC100280068	-	4e-7	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage