Gene omics information

Query gene ID	GmaAffx.46129.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.5	GmaAffx.46129.1.S1_at	BI892562	-	-	5e-6	At5g40780	LHT1	S.X.	H.G.	Please select
0.86	93.0	Gma.3831.1.S1_at	AI496603	-	-	2e-1	At1g18790	RWP-RK domain-containing protein	S.X.	H.G.	Please select
0.77	90.3	GmaAffx.93545.1.S1_at	CF808829	-	-	2e+0	At3g17668	ENA (ENHANCER OF ATNSI ACTIVITY)	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.82269.1.S1_s_at	BI788213	-	-	1e-2	At1g68190	zinc finger (B-box type) family protein	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.672.1.A1_s_at	BE659011	-	-	9e+0	At5g27020	unknown protein	S.X.	H.G.	Please select
0.59	79.5	GmaAffx.3562.1.S1_s_at	BI321106	-	-	7e-3	At2g40370	LAC5 (laccase 5)	S.X.	H.G.	Please select
0.38	53.3	GmaAffx.90357.1.S1_s_at	CF805740	-	-	1e+0	At4g33467	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.3	99.8	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
23.2	99.8	GSM292240	49_C033.1B.R9B3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
20.3	99.7	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
20.0	99.7	GSM292730	75_C165.1J.R9J1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.9	99.7	GSM293197	79_C053.1O.R9O3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.9	99.7	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.5	99.7	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.3	99.7	GSM292292	39_C075.1E.R9E1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.1	99.7	GSM293080	7_C033.1N.R9N3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.0	99.7	GSM292274	19_C089.1E.R9E3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	2e-71	270	GmaAffx.42701.1.S1_at	BI317008	-	-	7e-21	At5g40780	LHT1	C.G.	S.X.	Please select
0.19	9e-15	81	GmaAffx.48461.1.S1_at	AW396191	-	-	4e-15	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.08	2e-9	63	GmaAffx.92730.1.S1_s_at	CF808455	-	-	6e-1	At1g62110	mitochondrial transcription termination factor family protein / mTERF family protein	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C72000043_s_at	PsAffx.C72000043	-	-	9e-2	At4g25410	DNA binding / transcription factor	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C72000043_at	PsAffx.C72000043	-	-	9e-2	At4g25410	DNA binding / transcription factor	C.G.	S.X.	Please select
0.02	5e-1	36	GmaAffx.18180.2.S1_at	BE803396	-	-	4e-1	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.04	2e+0	34	HgAffx.3860.1.S1_at	CK350347	-	-	8e-1	At2g33793	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.71152.1.S1_at	AW396441	-	-	4e-3	At4g39530	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.02	7e+0	32	PsAffx.C94000058_at	PsAffx.C94000058	-	-	6e-1	At4g38710	glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	5e-6	52	Arabidopsis thaliana	At5g40780	834078	LHT1	Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	3e-3	42	Hordeum vulgare	HM10P19r_at	HM10P19r	-	-	1e+0	At4g03298	unknown protein	C.G.	S.X.	Please select
0.05	6e-4	46	Oryza sativa	Os08g0127100	AK065217.1	-	Lysine and histidine specific transporter	3e-19	At5g40780	LHT1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	2e-22	107	Populus trichocarpa	PtpAffx.42238.1.A1_s_at	BP933309	lysine/histidine transporter	-	6e-6	At1g48640	lysine and histidine specific transporter, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	9e-8	57	Triticum aestivum	Ta.4323.1.A1_at	BJ264015	-	-	5e-15	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.19	1e-7	56	Vitis vinifera	1617470_s_at	BQ797931	similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1); amino acid transmembrane transporter	-	6e-11	At1g48640	lysine and histidine specific transporter, putative	C.G.	S.X.	Please select
0.14	9e-6	50	Zea mays	Zm.17174.1.A1_at	CO531239	hypothetical protein LOC100273979	-	2e-6	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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