Gene omics information

Query gene ID	GmaAffx.45437.1.S1_at
Gene name	biotin synthase
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	92.5	GmaAffx.45437.1.S1_at	AI960629	biotin synthase	-	7e-21	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.91779.1.S1_at	CF807504	glutamate 1-semialdehyde aminotransferase	-	9e-48	At5g63570	GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE)	S.X.	H.G.	Please select
0.17	21.2	GmaAffx.54917.1.S1_at	AW666047	-	-	5e+0	At5g43440	2-oxoglutarate-dependent dioxygenase, putative	S.X.	H.G.	Please select
0.03	5.8	Gma.13032.1.S1_at	BQ629879	-	-	1e-3	At4g26710	ATP synthase subunit H family protein	S.X.	H.G.	Please select
0.02	4.5	GmaAffx.52373.2.S1_at	BM308168	-	-	6e-2	At3g18940	clast3-related	S.X.	H.G.	Please select
0.02	4.5	GmaAffx.53048.1.S1_s_at	AW395589	-	-	2e-14	At1g66070	translation initiation factor-related	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.9	97.1	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.8	97.0	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293377	62_1573.1Q.R160L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293381	66_C087.1Q.V7Q3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM244872	31_SLO.I5U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.1	95.8	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.0	95.6	GSM293589	20_2073.2B.R308L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293050	52_1069.1N.R041L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM294438	92_2469.2J.R237L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM293400	83_1593.1Q.R302L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.75	0	783	GmaAffx.91771.1.S1_x_at	CF807496	biotin synthase	-	3e-13	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	C.G.	S.X.	Please select
0.75	0	783	GmaAffx.91771.1.S1_s_at	CF807496	biotin synthase	-	3e-13	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	C.G.	S.X.	Please select
0.56	5e-109	395	GmaAffx.45437.2.S1_x_at	BE607697	biotin synthase	-	9e-7	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	C.G.	S.X.	Please select
0.00	5e-1	36	PsAffx.C180000010_at	PsAffx.C180000010	-	-	4e+0	At5g58820	subtilase family protein	C.G.	S.X.	Please select
0.03	5e-1	36	HgAffx.14177.1.S1_at	CB374195	-	-	4e+0	At3g15420	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C32000080_at	PsAffx.C32000080	-	-	1e-1	At5g03030	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.65550.1.S1_at	BI974950	-	-	4e-1	Atcg00490	-	C.G.	S.X.	Please select
0.03	8e+0	32	HgAffx.22117.1.S1_at	BI396963	-	-	7e-1	At3g18400	anac058 (Arabidopsis NAC domain containing protein 58)	C.G.	S.X.	Please select
0.03	8e+0	32	GmaAffx.49404.1.S1_at	BE805845	-	-	4e+0	At5g16120	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	7e-21	101	Arabidopsis thaliana	At2g43360	818937	BIO2 (BIOTIN AUXOTROPH 2)	Catalyzes the conversion of dethiobiotin to biotin.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	32	Hordeum vulgare	Contig8787_s_at	Contig8787	-	-	3e+0	At5g11340	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.19	2e-10	67	Oryza sativa	Os08g0540100	AK059296.1	-	Biotin synthase (EC 2.8.1.6) (Biotin synthetase)	5e-11	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	3e-24	113	Populus trichocarpa	PtpAffx.151173.1.S1_s_at	BU863351	hypothetical protein	-	3e-35	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	1e-16	87	Triticum aestivum	Ta.23173.1.S1_at	BT009521.1	-	-	6e-29	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1610848_at	CA814242	-	-	2e-1	At4g21930	unknown protein	C.G.	S.X.	Please select
0.11	4e-11	67	Zea mays	Zm.18363.1.S1_at	CO529135	hypothetical protein LOC100194297	-	8e-13	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage