Gene omics information

Query gene ID	GmaAffx.45359.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	82.9	GmaAffx.45359.2.S1_at	BQ453165	-	-	1e-60	At4g28540	CKL6 (CASEIN KINASE I-LIKE 6)	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.4245.5.S1_s_at	BI787772	-	-	3e+0	At1g29962	AGL64 (AGAMOUS-LIKE 64)	S.X.	H.G.	Please select
0.27	35.7	GmaAffx.45005.2.S1_at	CA801280	-	-	2e-16	At2g42520	DEAD box RNA helicase, putative	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.71580.1.S1_at	AW832468	-	-	5e-77	At2g16920	UBC23 (UBIQUITIN-CONJUGATING ENZYME 23)	S.X.	H.G.	Please select
0.24	30.9	GmaAffx.80776.3.S1_at	BF598114	-	-	1e-34	At1g70160	unknown protein	S.X.	H.G.	Please select
0.17	21.2	GmaAffx.39762.1.S1_at	BE209684	-	-	9e-1	At4g37230	oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.3	99.7	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
17.5	99.7	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
13.7	99.5	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.8	97.0	GSM293595	26_2077.2B.R246U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM293307	89_1202.1P.R124P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM293586	18_2092.2B.R298P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293593	24_2082.2B.R035P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM293604	34_2072.2B.R303P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM293369	55_1557.1Q.R126L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	2e-53	210	GmaAffx.93282.1.S1_at	CF809007	-	-	1e+0	At5g65610	unknown protein	C.G.	S.X.	Please select
0.15	2e-35	151	Gma.4443.1.S1_at	AW348382	-	-	6e+0	At5g23903	unknown protein	C.G.	S.X.	Please select
0.07	1e-26	121	GmaAffx.45359.1.S1_at	CA852617	-	-	2e+0	At5g17010	sugar transporter family protein	C.G.	S.X.	Please select
0.19	1e-23	111	GmaAffx.15583.1.S1_at	CA820645	-	-	3e+0	At5g23903	unknown protein	C.G.	S.X.	Please select
0.09	6e-23	109	Gma.555.1.S1_at	AW734193	-	-	2e+0	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	C.G.	S.X.	Please select
0.18	2e-22	107	Gma.1065.1.S1_at	AI416915	-	-	2e-38	At4g14340	CKI1 (CASEIN KINASE I)	C.G.	S.X.	Please select
0.09	3e-18	93	Gma.10799.1.S1_at	BG237181	-	-	4e-96	At4g26100	CK1 (CASEIN KINASE 1)	C.G.	S.X.	Please select
0.19	3e-9	63	Gma.15087.2.S1_at	CA800369	-	-	1e-94	At4g28860	ckl4 (Casein Kinase I-like 4)	C.G.	S.X.	Please select
0.11	1e-8	61	Gma.1353.2.S1_at	BG041704	-	-	1e-47	At4g26100	CK1 (CASEIN KINASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	1e-60	234	Arabidopsis thaliana	At4g28540	828972	CKL6 (CASEIN KINASE I-LIKE 6)	F:protein serine/threonine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasmodesma;MOPBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	2e-11	69	Hordeum vulgare	Contig6177_at	Contig6177	-	-	6e-95	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	C.G.	S.X.	Please select
0.24	2e-29	131	Oryza sativa	Os04g0514800	AK111987.1	-	Dual specificity kinase 1	7e-48	At1g03930	ADK1 (dual specificity kinase 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.51	3e-86	319	Populus trichocarpa	PtpAffx.75129.2.S1_s_at	CF231604	hypothetical protein	-	9e-120	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	2e-9	63	Triticum aestivum	Ta.14567.1.S1_at	BJ321982	-	-	1e-15	At5g44100	ckl7 (Casein Kinase I-like 7)	C.G.	S.X.	Please select
0.54	1e-75	282	Vitis vinifera	1610674_at	CF511328	hypothetical protein LOC100242639	-	2e-158	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please select
0.29	8e-32	137	Zea mays	Zm.2307.1.S1_at	AY104400.1	hypothetical protein LOC100279946	-	1e-17	At4g26100	CK1 (CASEIN KINASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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