CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.4382.3.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 GmaAffx.4382.3.S1_at CA784372 - - 9e-18 At1g18470 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.73 88.9 GmaAffx.67700.1.S1_at CB063625 - - 9e-1 At5g13620 unknown protein S.X. H.G.
0.67 86.1 GmaAffx.26272.1.S1_at BE330107 - - 6e-36 At1g43190 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative S.X. H.G.
0.61 81.8 Gma.15087.2.S1_at CA800369 - - 1e-94 At4g28860 ckl4 (Casein Kinase I-like 4) S.X. H.G.
0.60 80.7 GmaAffx.83672.1.S1_at BU926827 - - 2e-51 At2g26000 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.44 63.3 GmaAffx.90745.1.S1_s_at CF806470 - - 4e+0 At5g42235 Expressed protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.7 98.4 GSM209592 resistant_6hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.3 98.2 GSM209593 susceptible_6hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.9 98.0 GSM292825 82_C184.1K.R9K1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7 97.8 GSM293718 53_2144.2C.R109P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM294397 55_2458.2J.R073P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1 97.3 GSM293289 72_1238.1P.R145P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM294418 74_2470.2J.R237P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM292893 68_C210.1L.R9L2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM294244 92_2340.2H.R202P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8 97.0 GSM293060 61_C034.1N.R9N3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-2 40 GmaAffx.45741.1.S1_at BQ786295 - - 2e-1 At1g67910 unknown protein C.G. S.X.
0.02 2e-1 38 Gma.1899.2.A1_at CD411173 - - 2e-9 At5g35730 EXS family protein / ERD1/XPR1/SYG1 family protein C.G. S.X.
0.03 6e-1 36 GmaAffx.79852.2.S1_at AI965552 - - 2e-5 At2g17240 unknown protein C.G. S.X.
0.03 6e-1 36 Gma.14018.1.A1_at CD413603 - - 3e+0 At4g40030 histone H3.2 C.G. S.X.
0.01 3e+0 34 PsAffx.C70000006_at PsAffx.C70000006 - - 4e-1 At3g14480 glycine/proline-rich protein C.G. S.X.
0.00 3e+0 34 PsAffx.C126000045_s_at PsAffx.C126000045 - - 2e+0 At5g64440 AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase) C.G. S.X.
0.02 3e+0 34 HgAffx.63.1.S1_at AY242524.1 - - 9e-2 At2g46220 unknown protein C.G. S.X.
0.03 3e+0 34 GmaAffx.90243.1.S1_at CF805968 - - 3e-1 At5g49940 NFU2 (NIFU-LIKE PROTEIN 2) C.G. S.X.
0.02 3e+0 34 GmaAffx.63570.1.S1_at BG362792 - - 2e-17 At3g04480 endoribonuclease C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 9e-18 91 Arabidopsis thaliana At1g18470 838427 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPOVF - - - C.G. S.X.
0.17 8e-32 137 Hordeum vulgare Contig7543_at Contig7543 - - 3e-22 At1g68820 membrane protein, putative C.G. S.X.
0.13 1e-27 125 Oryza sativa Os03g0706900 AK065293.1 - Zn-finger, RING domain containing protein 2e-14 At1g73950 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.34 2e-35 151 Populus trichocarpa PtpAffx.124368.1.S1_at CN517633 hypothetical protein - 9e-21 At1g18470 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.4290.1.A1_at CA681239 - - 3e+0 At2g21045 - C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1613381_at CB003973 - - 1e+0 At3g14030 - C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.530.1.A1_at AI711707 nuclear migration protein nudC - 9e-16 At5g53400 nuclear movement family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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