Gene omics information

Query gene ID	GmaAffx.43676.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.8	GmaAffx.43676.1.S1_at	AW234124	-	-	8e-7	At2g47510	FUM1 (FUMARASE 1)	S.X.	H.G.	Please select
0.80	91.5	Gma.5594.1.S1_at	BQ786297	-	-	1e-9	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	S.X.	H.G.	Please select
0.77	90.3	Gma.7635.1.S1_at	AW310136	-	-	9e-7	At2g41790	peptidase M16 family protein / insulinase family protein	S.X.	H.G.	Please select
0.77	90.3	Gma.14945.1.S1_at	BG157566	-	-	2e-1	At3g12210	sequence-specific DNA binding	S.X.	H.G.	Please select
0.47	66.6	GmaAffx.34569.1.S1_s_at	AW306183	-	-	1e+1	Atcg00130	-	S.X.	H.G.	Please select
0.25	32.6	Gma.8074.1.S1_s_at	BE823449	-	-	6e-10	At2g44520	COX10 (cytochrome c oxidase 10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.2	97.4	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.4	96.4	GSM293114	29_1139.1O.R087L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293382	67_1583.1Q.R209L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293322	12_1577.1Q.R172L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292183	43-C017.1A.R9A3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293112	27_C047.1O.R9O2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM209587	resistant_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.9	95.4	GSM292276	20_C079.1E.R9E2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM244865	2_V71.I3L4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
2.8	95.1	GSM244794	14_CON.I1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	4e-77	287	Gma.16566.1.S1_at	CD400974	-	-	6e-31	At5g50950	fumarate hydratase, putative / fumarase, putative	C.G.	S.X.	Please select
0.03	1e+0	34	Gma.7661.1.A1_at	CD393955	-	-	3e-8	At1g08420	kelch repeat-containing protein / serine/threonine phosphoesterase family protein	C.G.	S.X.	Please select
0.04	1e+0	34	Gma.12377.1.S1_at	BG551365	-	-	1e+0	At1g53560	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.10429.1.S1_at	CD391948	-	-	3e-9	At5g01270	CPL2	C.G.	S.X.	Please select
0.02	4e+0	32	PsAffx.C36000029_at	PsAffx.C36000029	-	-	4e-2	At5g23100	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C2000078_at	PsAffx.C2000078	-	-	9e-1	At1g34030	40S ribosomal protein S18 (RPS18B)	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C166000038_s_at	PsAffx.C166000038	-	-	1e-1	At2g26940	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C158000005_at	PsAffx.C158000005	-	-	4e+0	Atmg00940	-	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C158000005_s_at	PsAffx.C158000005	-	-	4e+0	Atmg00940	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	8e-7	54	Arabidopsis thaliana	At2g47510	819364	FUM1 (FUMARASE 1)	fumarase (FUM1)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	32	Hordeum vulgare	Contig4599_s_at	Contig4599	-	-	2e-1	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os01g0508300	AK101435.1	-	Hypothetical protein	5e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	5e-18	91	Populus trichocarpa	PtpAffx.15637.1.S1_at	CV232239	hypothetical protein	-	1e-101	At2g47510	FUM1 (FUMARASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-1	34	Triticum aestivum	TaAffx.110520.1.S1_at	CA658183	-	-	3e+0	At1g15790	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1618510_at	CF203363.1	-	-	2e-1	At1g64405	unknown protein	C.G.	S.X.	Please select
0.05	1e-6	52	Zea mays	Zm.3679.1.A1_at	CF036994	hypothetical protein LOC100279871	-	1e-36	At2g47510	FUM1 (FUMARASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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