CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.43012.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 GmaAffx.43012.1.S1_at AW733354 - - 1e-8 At2g35110 GRL (GNARLED) S.X. H.G.
0.67 86.1 GmaAffx.87850.1.S1_at BU080614 - - 6e-14 At5g47020 glycine-rich protein S.X. H.G.
0.60 80.7 GmaAffx.75246.1.S1_at AW508335 - - 2e-14 At1g60800 NIK3 (NSP-INTERACTING KINASE 3) S.X. H.G.
0.40 57.1 GmaAffx.83370.1.S1_at BQ080389 - - 1e-8 At5g25510 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative S.X. H.G.
0.36 50.8 GmaAffx.52789.1.S1_at AW203783 - - 2e-10 At2g20990 SYTA (SYNAPTOTAGMIN A) S.X. H.G.
0.35 48.6 Gma.13221.2.S1_at BU082968 - - 1e+0 At1g51390 NFU5 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.1 99.0 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
7.2 98.9 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
6.1 98.5 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
5.4 98.2 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
5.0 98.0 GSM293404 87_1582.1Q.R195P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM293654 7_2070.2B.R213P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM293613 42_2054.2B.R307P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM294370 30_2440.2J.R135P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2 97.4 GSM292178 34-1006.1A.R003P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2 97.4 GSM293491 10_3002.2A.SLA1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-11 69 GmaAffx.29649.1.S1_at CD412120 - - 6e-9 At3g10840 hydrolase, alpha/beta fold family protein C.G. S.X.
0.06 8e-11 67 Gma.7462.1.A1_at CD413745 - - 2e-42 At1g52150 ATHB-15 C.G. S.X.
0.10 3e-10 65 GmaAffx.6538.1.A1_at CD397170 - - 7e+0 At5g26040 HDA2 C.G. S.X.
0.08 3e-10 65 GmaAffx.60597.1.S1_at BQ628400 - - 3e+0 At4g29820 CFIM-25 C.G. S.X.
0.07 3e-10 65 GmaAffx.22346.3.S1_at AI437579 - - 1e+0 At4g08555 unknown protein C.G. S.X.
0.07 3e-10 65 GmaAffx.14173.1.S1_at CD418062 - - 2e-14 At4g16695 unknown protein C.G. S.X.
0.09 3e-10 65 GmaAffx.11191.1.A1_at CD407617 - - 2e+0 At5g43513 - C.G. S.X.
0.07 1e-9 63 GmaAffx.85567.1.S1_at BE611209 - - 6e-2 At5g08540 unknown protein C.G. S.X.
0.10 1e-9 63 GmaAffx.83175.1.S1_at BQ611010 - - 2e+0 At5g50740 metal ion binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-8 59 Arabidopsis thaliana At2g35110 818077 GRL (GNARLED) Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Mutant displays distorted trichomes, a phenotype that can be phenocopied by treatment of WT plants with actin-interacting drugs. - - - C.G. S.X.
0.12 4e-10 63 Hordeum vulgare Contig2082_x_at Contig2082 - - 9e-1 At1g72416 heat shock protein binding C.G. S.X.
0.04 2e-3 44 Oryza sativa Os05g0202800 AF009959.1 - Plant metallothionein, family 15 protein 3e-7 At3g15353 MT3 (METALLOTHIONEIN 3) C.G. S.X.
0.39 3e-29 129 Populus trichocarpa PtpAffx.105803.4.A1_at CV229124 - - 1e-19 At2g35110 GRL (GNARLED) C.G. S.X.
0.09 2e-10 65 Triticum aestivum TaAffx.9571.1.S1_at CA594679 - - 9e+0 At5g65090 BST1 (BRISTLED 1) C.G. S.X.
0.04 4e-6 50 Vitis vinifera 1617182_at CB921793 - - 5e-3 At1g62240 unknown protein C.G. S.X.
0.06 1e-7 56 Zea mays Zm.14917.1.A1_at BM378490 - - 9e-1 At1g04330 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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