Gene omics information

Query gene ID	GmaAffx.42424.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.84	92.6	GmaAffx.42424.1.S1_at	AW756256	-	-	2e-45	At5g19330	armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein	S.X.	H.G.	Please select
0.47	66.6	Gma.4348.3.S1_at	BQ080151	-	-	3e-26	At2g27230	LHW (LONESOME HIGHWAY)	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.61984.1.S1_at	BM523130	-	-	4e-9	At5g18810	SCL28	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.70422.1.S1_at	CA938710	-	-	1e+0	At1g20010	TUB5	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.15284.1.S1_at	BE822730	-	-	6e+0	At1g21880	LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.82.1.S1_at	CD415578	-	-	9e-8	At3g10210	-	S.X.	H.G.	Please select
0.38	53.3	GmaAffx.82131.1.S1_at	BQ473196	-	-	2e-2	At4g14860	atofp11 (Arabidopsis thaliana ovate family protein 11)	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.22294.1.S1_at	AW756376	-	-	4e-34	At5g18620	CHR17 (CHROMATIN REMODELING FACTOR17)	S.X.	H.G.	Please select
0.31	42.2	GmaAffx.82659.1.S1_at	CA784117	-	-	2e-11	At5g11040	-	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.1876.2.S1_at	BG510959	-	-	5e-7	At3g62980	TIR1 (TRANSPORT INHIBITOR RESPONSE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.7	98.4	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.9	98.0	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM293390	74_1588.1Q.R230P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM294197	4_3138.2H.R9H2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM292768	30_C198.1K.R9K3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM294604	71_2546.2L.R100P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294607	74_2540.2L.R156P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM294207	59_2364.2H.R155P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM294059	17_3118.2G.R9G2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	PsAffx.C2000239_at	PsAffx.C2000239	-	-	9e-1	At5g27450	MK (MEVALONATE KINASE)	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C300000003_at	PsAffx.C300000003	-	-	6e+0	At5g50090	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	HgAffx.20640.1.S1_at	BI749113	-	-	3e+0	At5g11060	KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4)	C.G.	S.X.	Please select
0.04	1e+0	34	HgAffx.11342.1.S1_at	CB935108	-	-	5e+0	At4g02725	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.33847.1.S1_at	BM309644	-	-	1e-2	At5g13330	Rap2.6L (related to AP2 6L)	C.G.	S.X.	Please select
0.01	1e+0	34	Gma.4193.1.S1_at	AW705861	-	-	3e-133	At5g26751	ATSK11	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C953000002_s_at	PsAffx.C953000002	-	-	3e-1	At3g22120	CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN)	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C7000196_at	PsAffx.C7000196	-	-	4e+0	At4g26730	methyltransferase	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C45000038_at	PsAffx.C45000038	-	-	3e-2	At1g50010	TUA2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-45	182	Arabidopsis thaliana	At5g19330	832053	armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein	F:protein binding, binding;P:unknown;C:plasma membrane;MPOFVBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	2e-18	91	Hordeum vulgare	Contig9452_at	Contig9452	-	-	4e-28	At5g19330	armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein	C.G.	S.X.	Please select
0.13	3e-14	79	Oryza sativa	Os05g0398100	9633.m03036	-	BTB/POZ domain containing protein	1e-31	At5g19330	armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	7e-36	151	Populus trichocarpa	PtpAffx.158529.1.S1_at	CN550511	hypothetical protein	-	3e-123	At5g19330	armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	4e-18	91	Triticum aestivum	TaAffx.59289.1.S1_at	CA604455	-	-	1e-15	At5g19330	armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1619352_at	CA818149	-	-	8e-1	At5g44572	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	Zm.1327.1.A1_at	BE643637	hypothetical protein LOC100273057	-	5e+0	At5g24860	FPF1 (FLOWERING PROMOTING FACTOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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