Gene omics information

Query gene ID	GmaAffx.41904.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	66.6	GmaAffx.41904.1.S1_at	BM525909	-	-	1e+0	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	S.X.	H.G.	Please select
0.25	32.6	Gma.11030.1.S1_at	BE190894	-	-	6e-2	At4g36770	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	S.X.	H.G.	Please select
0.25	32.6	Gma.9736.1.S1_at	CA936974	-	-	4e+0	Atcg01020	-	S.X.	H.G.	Please select
0.22	28.1	Gma.4084.1.S1_at	CD412016	-	-	6e-7	At4g14270	-	S.X.	H.G.	Please select
0.18	22.3	GmaAffx.83609.1.S1_at	BU926787	-	-	1e-12	At2g44910	ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4)	S.X.	H.G.	Please select
0.17	21.2	GmaAffx.93607.1.S1_s_at	CF809332	-	-	7e-5	At5g64260	EXL2 (EXORDIUM LIKE 2)	S.X.	H.G.	Please select
0.03	5.8	Gma.12996.1.A1_at	AW306798	-	-	3e-4	At3g09820	ADK1 (adenosine kinase 1)	S.X.	H.G.	Please select
0.01	3.4	GmaAffx.79139.1.S1_at	BM309694	-	-	3e-16	At1g73590	PIN1 (PIN-FORMED 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
310.3	100.0	GSM147938	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
269.3	100.0	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
58.8	99.9	GSM182033	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
28.3	99.8	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
22.8	99.8	GSM292229	25_C029.1B.R9B2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
21.0	99.7	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
20.0	99.7	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
17.1	99.7	GSM147936	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
16.1	99.6	GSM182030	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
14.1	99.6	GSM147940	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-1	38	GmaAffx.11151.1.A1_at	CD399977	-	-	7e-1	At5g62280	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	38	Gma.15648.1.S1_s_at	CD404676	-	-	4e-47	At1g51060	HTA10	C.G.	S.X.	Please select
0.01	4e-1	36	PsAffx.C39000008_at	PsAffx.C39000008	-	-	3e-2	At1g50920	GTP-binding protein-related	C.G.	S.X.	Please select
0.03	4e-1	36	GmaAffx.65333.1.A1_at	BU550617	-	-	5e+0	At5g23035	-	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.72882.1.S1_at	BG790087	-	-	3e-1	At1g52855	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.4995.1.S1_at	BI970336	-	-	3e+0	At1g10780	F-box family protein	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C87000034_at	PsAffx.C87000034	-	-	2e+0	At3g06780	glycine-rich protein	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C25000065_at	PsAffx.C25000065	-	-	3e-1	At2g26720	plastocyanin-like domain-containing protein / mavicyanin, putative	C.G.	S.X.	Please select
0.00	7e+0	32	PsAffx.C110000003_at	PsAffx.C110000003	-	-	2e-1	At1g55530	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At2g04700	815013	ferredoxin thioredoxin reductase catalytic beta chain family protein	F:ferredoxin:thioredoxin reductase activity, ferredoxin reductase activity;P:unknown;C:chloroplast;BOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	32	Hordeum vulgare	EBem10_SQ005_F01_x_at	EBem10_SQ005_F01	-	-	3e-2	At2g26980	CIPK3 (CBL-INTERACTING PROTEIN KINASE 3)	C.G.	S.X.	Please select
0.02	6e-1	36	Oryza sativa	Os01g0700100	AK059965.1	-	MtN3 and saliva related transmembrane proteinfamily protein	4e-2	At3g53420	PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	Ptp.277.1.A1_at	CK087979	hypothetical protein	-	8e-4	At3g02640	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	Ta.20635.1.S1_at	CA486628	-	-	3e-7	At5g55125	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1617799_at	CF518909	hypothetical protein LOC100266474	-	4e+0	At1g17490	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.559.1.A1_at	AI714543	-	-	3e+0	At5g48970	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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