Gene omics information

Query gene ID	GmaAffx.40419.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.3	GmaAffx.40419.1.S1_at	BF325410	-	-	1e-11	At3g03570	-	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.57700.1.S1_at	AW781821	-	-	8e-20	At1g75850	VPS35B (VPS35 HOMOLOG B)	S.X.	H.G.	Please select
0.43	60.6	GmaAffx.76624.1.S1_at	CA939046	-	-	6e-10	At4g31580	SRZ-22	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.91473.1.S1_at	CF807198	-	-	3e-22	At4g28860	ckl4 (Casein Kinase I-like 4)	S.X.	H.G.	Please select
0.35	48.6	GmaAffx.90745.1.S1_s_at	CF806470	-	-	4e+0	At5g42235	Expressed protein	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.39895.1.S1_at	BE473680	-	-	2e-7	At2g17790	VPS35A (VPS35 HOMOLOG A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	98.4	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM293247	34_C066.1P.R9P2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM293877	29_3084.2E.R9E2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293911	5_2236.2E.R249P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM293724	59_2130.2C.R207P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM292959	38_C232.1M.R9M3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM293289	72_1238.1P.R145P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM293613	42_2054.2B.R307P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM292706	53_C176.1J.R9J3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	34	PsAffx.C23000068_at	PsAffx.C23000068	-	-	5e-1	At5g53330	-	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.15131.1.S1_at	AW307100	-	-	3e-1	At3g47630	-	C.G.	S.X.	Please select
0.01	1e+0	34	Gma.1390.1.S1_at	BE659513	ferredoxin-dependent glutamate synthase	-	6e-164	At5g04140	GLU1 (GLUTAMATE SYNTHASE 1)	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C5000182_at	PsAffx.C5000182	-	-	9e-1	At1g63940	monodehydroascorbate reductase, putative	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C230000008_at	PsAffx.C230000008	-	-	9e-3	At5g11710	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	C.G.	S.X.	Please select
0.03	4e+0	32	HgAffx.23582.1.S1_at	BF014268	-	-	4e+0	At2g16592	-	C.G.	S.X.	Please select
0.03	4e+0	32	Gma.667.1.S1_at	CD414413	-	-	1e-7	At4g09040	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.05	4e+0	32	Gma.5285.1.S1_at	BM091965	-	-	7e+0	Atcg00520	-	C.G.	S.X.	Please select
0.04	4e+0	32	Gma.4711.1.A1_at	BI968874	-	-	3e+0	At5g55790	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e-11	69	Arabidopsis thaliana	At3g03570	821234	-	F:molecular_function unknown;P:biological_process unknown;C:cytosol;MPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	36	Hordeum vulgare	HW07B05u_at	HW07B05u	-	-	1e+0	At3g22820	allergen-related	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os04g0252200	AK121105.1	-	Hypothetical protein	2e-13	At5g51660	CPSF160	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	7e-2	38	Populus trichocarpa	PtpAffx.205164.1.S1_at	pmrna10221	hypothetical protein	-	2e-11	At4g40050	signal transducer	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.113804.1.S1_at	CA604818	-	-	3e+0	At4g05000	VPS28-2	C.G.	S.X.	Please select
0.03	9e-1	32	Vitis vinifera	1622792_at	CD009476	-	-	5e+0	At5g26110	ATP binding / catalytic/ protein kinase	C.G.	S.X.	Please select
0.03	3e-1	34	Zea mays	Zm.4145.1.A1_at	AI855175	calcineurin B-like protein 4	-	1e+0	At1g64480	CBL8 (CALCINEURIN B-LIKE PROTEIN 8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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