Gene omics information

Query gene ID	GmaAffx.39956.1.A1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.9	GmaAffx.39956.1.A1_s_at	BE583808	-	-	1e+1	At3g44100	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	S.X.	H.G.	Please select
0.87	93.2	PsAffx.CL322Contig1_s_at	PsAffx.CL322Contig1	-	-	2e+1	At5g44578	unknown protein	S.X.	H.G.	Please select
0.82	91.9	PsAffx.CL4Contig3_at	PsAffx.CL4Contig3	-	-	7e-1	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please select
0.78	90.6	PsAffx.CL809Contig1_at	PsAffx.CL809Contig1	-	-	2e-3	At5g42740	glucose-6-phosphate isomerase, cytosolic (PGIC)	S.X.	H.G.	Please select
0.74	89.2	PsAffx.psMY005iE01r_s_at	PsAffx.psMY005iE01r	-	-	1e-3	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	S.X.	H.G.	Please select
0.74	89.2	PsAffx.CL301Contig1_at	PsAffx.CL301Contig1	-	-	2e+0	At1g77330	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	S.X.	H.G.	Please select
0.70	87.1	PsAffx.CL162Contig1_at	PsAffx.CL162Contig1	-	-	1e+1	At5g46350	WRKY8	S.X.	H.G.	Please select
0.69	86.8	GmaAffx.35357.1.A1_s_at	BE583592	-	-	8e-13	At2g36530	LOS2	S.X.	H.G.	Please select
0.60	80.7	PsAffx.psMC009xE03f_at	PsAffx.psMC009xE03f	-	-	2e-1	At3g10405	unknown protein	S.X.	H.G.	Please select
0.56	78.2	PsAffx.CL381Contig1_at	PsAffx.CL381Contig1	-	-	9e-1	At2g43400	ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
178.6	100.0	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
162.8	100.0	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
113.5	100.0	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
100.8	100.0	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
98.9	100.0	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
94.9	100.0	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
86.5	100.0	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
85.8	100.0	GSM171725	9_Z.F.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
84.6	100.0	GSM171646	21_V.E.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
79.9	100.0	GSM171677	28_Z.E.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	0	634	PsAffx.CL842Contig1_at	PsAffx.CL842Contig1	-	-	2e+0	At3g07930	HhH-GPD base excision DNA repair family protein	C.G.	S.X.	Please select
0.01	2e-1	36	PsAffx.C48000065_at	PsAffx.C48000065	-	-	9e-1	At5g64290	DIT2.1 (DICARBOXYLATE TRANSPORT 2.1)	C.G.	S.X.	Please select
0.03	2e-1	36	PsAffx.C1316000001_at	PsAffx.C1316000001	-	-	2e+0	At5g18180	Gar1 RNA-binding region family protein	C.G.	S.X.	Please select
0.02	9e-1	34	PsAffx.CL326Contig1_at	PsAffx.CL326Contig1	-	-	3e+0	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	C.G.	S.X.	Please select
0.01	9e-1	34	PsAffx.C32000096_at	PsAffx.C32000096	-	-	7e+0	At5g18180	Gar1 RNA-binding region family protein	C.G.	S.X.	Please select
0.01	9e-1	34	PsAffx.C12000013_at	PsAffx.C12000013	-	-	9e-2	At1g51980	mitochondrial processing peptidase alpha subunit, putative	C.G.	S.X.	Please select
0.04	9e-1	34	GmaAffx.32909.2.S1_at	BU761193	-	-	3e+0	At4g26820	-	C.G.	S.X.	Please select
0.00	4e+0	32	PsAffx.C96000006_s_at	PsAffx.C96000006	-	-	9e-1	At2g36420	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	32	PsAffx.C617000004_at	PsAffx.C617000004	-	-	1e+0	At3g11090	LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+1	30	Arabidopsis thaliana	At3g44100	823530	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cell wall, vacuole, anchored to membrane;FPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+0	32	Hordeum vulgare	Contig15278_at	Contig15278	-	-	1e+0	At5g48205	zinc ion binding	C.G.	S.X.	Please select
0.07	5e+0	32	Oryza sativa	OsAffx.28564.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.210801.1.S1_x_at	pmrna21209	hypothetical protein	-	4e+0	At5g05770	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.57132.1.S1_at	CA635926	-	-	4e+0	At5g51140	pseudouridine synthase family protein	C.G.	S.X.	Please select
0.03	1e+1	28	Vitis vinifera	1613320_at	BQ795571	-	-	4e-25	At1g09020	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)	C.G.	S.X.	Please select
0.03	1e+0	32	Zea mays	Zm.7393.1.A1_at	CF646803	hypothetical protein LOC100194238	-	6e+0	At5g25610	RD22	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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