CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.39725.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 88.9 GmaAffx.39725.1.S1_at BI945410 - - 8e-1 At3g57280 unknown protein S.X. H.G.
0.91 98.6 Gma.5594.1.S1_at BQ786297 - - 1e-9 At3g09840 CDC48 (CELL DIVISION CYCLE 48) S.X. H.G.
0.73 88.9 Gma.14945.1.S1_at BG157566 - - 2e-1 At3g12210 sequence-specific DNA binding S.X. H.G.
0.73 88.9 Gma.7635.1.S1_at AW310136 - - 9e-7 At2g41790 peptidase M16 family protein / insulinase family protein S.X. H.G.
0.57 78.8 GmaAffx.43676.1.S1_at AW234124 - - 8e-7 At2g47510 FUM1 (FUMARASE 1) S.X. H.G.
0.36 50.8 GmaAffx.34569.1.S1_s_at AW306183 - - 1e+1 Atcg00130 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.9 98.0 GSM293113 28_C047.1O.R9O2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8 97.9 GSM209583 resistant_6hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.7 97.8 GSM292274 19_C089.1E.R9E3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM292229 25_C029.1B.R9B2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM201125 Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
4.2 97.4 GSM292289 36_C081.1E.SLE2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM293333 22_1549.1Q.R078L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM294272 26_2427.2I.R297L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8 97.0 GSM201119 Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
3.8 97.0 GSM293332 21_1565.1Q.R153L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.55 2e-110 398 GmaAffx.92717.1.S1_at CF808442 - - 6e-1 At3g57280 unknown protein C.G. S.X.
0.06 1e+0 34 PsAffx.psML005xK06f_s_at PsAffx.psML005xK06f - - 9e+0 At3g16870 zinc finger (GATA type) family protein C.G. S.X.
0.01 1e+0 34 PsAffx.C49000011_at PsAffx.C49000011 - - 9e-2 At3g32160 unknown protein C.G. S.X.
0.05 1e+0 34 GmaAffx.86062.3.S1_at BF598929 - - 9e-1 At2g23660 LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10) C.G. S.X.
0.04 1e+0 34 GmaAffx.62512.1.S1_at BU084002 - - 9e-1 Atcg00440 - C.G. S.X.
0.04 4e+0 32 GmaAffx.80081.1.S1_at AW186496 - - 4e-3 At3g61350 SKIP4 (SKP1 INTERACTING PARTNER 4) C.G. S.X.
0.04 4e+0 32 GmaAffx.74850.1.S1_at CA819374 - - 8e-1 At1g66400 calmodulin-related protein, putative C.G. S.X.
0.03 4e+0 32 GmaAffx.53370.1.S1_at BI970886 - - 4e-3 At5g67620 unknown protein C.G. S.X.
0.03 4e+0 32 GmaAffx.378.1.S1_at CD405891 - - 2e+0 At2g25482 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 8e-1 34 Arabidopsis thaliana At3g57280 824895 unknown protein F:unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;PMO - - - C.G. S.X.
0.04 6e+0 30 Hordeum vulgare baak26d07_at baak26d07 - - 5e-2 At4g22800 unknown protein C.G. S.X.
0.06 6e+0 32 Oryza sativa OsAffx.26604.1.S1_at - - - 0 C.G. S.X.
0.10 1e-9 63 Populus trichocarpa PtpAffx.9192.1.S1_at CV277641 hypothetical protein - 2e-6 At3g57280 unknown protein C.G. S.X.
0.05 1e+1 30 Triticum aestivum TaAffx.77502.1.S1_at CA745141 - - 6e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.13 4e-12 69 Vitis vinifera 1609814_at CB340074 - - 1e+0 At3g57280 unknown protein C.G. S.X.
0.04 9e-5 46 Zea mays Zm.15678.1.A1_a_at CD440195 hypothetical protein LOC100192926 - 7e+0 At4g18280 glycine-rich cell wall protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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