Gene omics information

Query gene ID	GmaAffx.39172.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	79.5	GmaAffx.39172.1.S1_at	BM094230	-	-	2e-5	At1g12340	-	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.26469.1.S1_at	BE610301	-	-	4e-9	At5g56750	Ndr family protein	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.73287.1.S1_at	BI892641	-	-	9e-1	At1g70440	SRO3 (SIMILAR TO RCD ONE 3)	S.X.	H.G.	Please select
0.57	78.8	GmaAffx.86740.1.S1_at	BG510614	-	-	6e-3	At2g37940	-	S.X.	H.G.	Please select
0.55	76.3	Gma.18042.1.S1_at	BG725267	-	-	4e-1	At4g00315	F-box family protein	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.73263.1.S1_at	BI974237	-	-	9e-5	At3g61160	shaggy-related protein kinase beta / ASK-beta (ASK2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
1182.2	100.0	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
780.9	100.0	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
641.3	100.0	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
0.6	60.0	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
0.6	60.0	GSM244914	4_SLO.I1W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
0.6	60.0	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
0.6	60.0	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
0.5	55.0	GSM292836	16_1473.1L.R287U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
0.5	55.0	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
0.5	55.0	GSM294026	77_3105.2F.R9F3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-3	42	Gma.8110.1.S1_at	AI856524	-	-	2e+0	At1g19950	HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H))	C.G.	S.X.	Please select
0.01	3e-2	40	PsAffx.C43000074_at	PsAffx.C43000074	-	-	4e-2	At5g26330	plastocyanin-like domain-containing protein / mavicyanin, putative	C.G.	S.X.	Please select
0.01	1e-1	38	Gma.6970.1.S1_at	CD392909	-	-	4e-34	At1g13270	MAP1C (METHIONINE AMINOPEPTIDASE 1B)	C.G.	S.X.	Please select
0.03	4e-1	36	Gma.6910.1.S1_at	CD413670	-	-	2e+0	At4g11970	YT521-B-like family protein	C.G.	S.X.	Please select
0.03	2e+0	34	PsAffx.C189000005_at	PsAffx.C189000005	-	-	2e+1	At5g05040	-	C.G.	S.X.	Please select
0.04	2e+0	34	HgAffx.17841.1.S1_at	CB278549	-	-	9e-1	At2g34315	disease resistance protein-related	C.G.	S.X.	Please select
0.02	2e+0	34	HgAffx.149.1.S1_at	AJ223174.1	-	-	8e-1	At3g54290	-	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.91959.1.S1_at	CF807684	-	-	4e-3	At1g04340	lesion inducing protein-related	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.91959.1.S1_s_at	CF807684	-	-	4e-3	At1g04340	lesion inducing protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	2e-5	50	Arabidopsis thaliana	At1g12340	837788	-	F:molecular_function unknown;P:intracellular signaling cascade;C:membrane;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-4	46	Hordeum vulgare	Contig20613_at	Contig20613	-	-	4e-1	At5g38440	self-incompatibility protein-related	C.G.	S.X.	Please select
0.04	2e-6	54	Oryza sativa	Os12g0506400	AK060944.1	-	Cornichon family protein	2e-4	At1g62880	cornichon family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-1	36	Populus trichocarpa	PtpAffx.8459.2.S1_a_at	DN501124	hypothetical protein	-	2e-3	At1g62880	cornichon family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	2e-2	40	Triticum aestivum	TaAffx.32265.1.S1_at	CA597903	-	-	8e-1	At1g12340	-	C.G.	S.X.	Please select
0.09	4e-13	73	Vitis vinifera	1610322_at	CF213730	hypothetical protein LOC100258514	-	2e-6	At1g12390	cornichon family protein	C.G.	S.X.	Please select
0.03	5e-7	54	Zea mays	Zm.3889.3.A1_at	AY105968.1	ER-derived vesicles protein ERV14	-	2e+0	At2g16005	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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