Gene omics information

Query gene ID GmaAffx.3905.3.S1_at
Gene name
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7388.9GmaAffx.3905.3.S1_atBG047142--1e+0Atmg01230-S.X.H.G.
0.7790.3GmaAffx.3905.1.S1_s_atCA818952--2e-1At3g22120CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN)S.X.H.G.
0.5576.3Gma.7515.1.S1_atBU548256--2e-15At2g06925PLA2-ALPHAS.X.H.G.
0.5071.7Gma.12928.1.A1_atCD396216--3e+0At3g24450copper-binding family proteinS.X.H.G.
0.4463.3Gma.5849.1.S1_atCD402150--1e+0At4g01895systemic acquired resistance (SAR) regulator protein NIMIN-1-relatedS.X.H.G.
0.3650.8Gma.6481.1.S1_atCD416703--2e-2At3g08770LTP6S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
30.799.8GSM201111Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stage
27.599.8GSM147950Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stage
19.499.7GSM17169432_V.L.M.3, Experimental replicate VGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
16.999.7GSM147948Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stage
16.599.6GSM17160411_Y.L.M.3, Experimental replicate YGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
14.699.6GSM191086Soybean_Cotyledon_HI2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stage
14.299.6GSM191085Soybean_Cotyledon_HI1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stage
13.799.5GSM24479514_CON.M3W3.CEL, Experimental replicate 3GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
13.799.5GSM29461279_2537.2L.R151U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.199.5GSM147955Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stage
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.371e-121436GmaAffx.90947.1.S1_atCF806672--8e-2At3g22120CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN)C.G.S.X.
0.211e-121436GmaAffx.3905.1.S1_s_atCA818952--2e-1At3g22120CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN)C.G.S.X.
0.103e-26119Gma.4017.2.S1_s_atCA784015--7e+0At5g24879unknown proteinC.G.S.X.
0.046e-342GmaAffx.79154.1.S1_atCA782692--8e-1At5g67520adenylylsulfate kinase, putativeC.G.S.X.
0.013e-240PsAffx.C33000114_atPsAffx.C33000114--6e-1At4g18905transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.043e-240Gma.4207.1.S1_atBE822796MYB transcription factor MYB48-9e-27At2g16720MYB7 (MYB DOMAIN PROTEIN 7)C.G.S.X.
0.031e-138GmaAffx.18649.1.S1_atAW351025--1e+0At1g10220-C.G.S.X.
0.031e-138Gma.3273.1.S1_atCD415617--9e-24At1g08465YAB2 (YABBY2)C.G.S.X.
0.034e-136PsAffx.CL2447Contig1_atPsAffx.CL2447Contig1--2e+0At1g07350transformer serine/arginine-rich ribonucleoprotein, putativeC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e+034Arabidopsis thalianaAtmg01230--hypothetical protein---C.G.S.X.
0.043e-238Hordeum vulgarerbah53j14_atrbah53j14--4e-2At3g26650GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)C.G.S.X.
0.045e-136Oryza sativaOs09g03200009637.m01227--2e-1At4g10480nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeC.G.S.X.
0.185e-1685Populus trichocarpaPtpAffx.249.76.S1_a_atCK091111hypothetical protein-9e-6At4g15160lipid binding / structural constituent of cell wallC.G.S.X.
0.043e-136Triticum aestivumTaAffx.58985.1.S1_atCA610633--3e+0At5g02060integral membrane protein, putativeC.G.S.X.
0.139e-546Vitis vinifera1614803_atAY046416.1proline-rich protein 1-2e+0At2g10940protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.051e-136Zea maysZm.16518.1.S1_atAY105889.1hypothetical protein LOC100277605-7e-1At5g07600oleosin / glycine-rich proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage