Gene omics information

Query gene ID	GmaAffx.37006.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	81.8	GmaAffx.37006.2.S1_at	AI494839	-	-	2e-11	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	S.X.	H.G.	Please select
0.67	86.1	Gma.3977.2.S1_a_at	AW100324	-	-	7e-14	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.75704.1.S1_at	AI443867	-	-	7e-1	At4g09940	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.76522.1.S1_at	BM890860	-	-	3e-10	At1g55680	WD-40 repeat family protein	S.X.	H.G.	Please select
0.43	60.6	GmaAffx.93138.1.S1_s_at	CF808863	-	-	2e-27	At2g32080	PUR ALPHA-1	S.X.	H.G.	Please select
0.27	35.7	Gma.9706.3.S1_x_at	AW133151	-	-	2e-5	At2g39840	TOPP4	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	96.8	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.7	94.8	GSM293589	20_2073.2B.R308L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM292605	34_1327.1I.R205L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293313	94_1237.1P.R145U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM292193	55-1011.1A.R007L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM293221	10_1541.1P.R051L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM293382	67_1583.1Q.R209L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM292528	42_1295.1H.R187L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM293539	54_3007.2A.SLA2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-2	38	Gma.7852.1.S1_at	CA819291	beta-1,3-glucanase	-	6e-1	At3g24710	-	C.G.	S.X.	Please select
0.00	3e-1	36	PsAffx.C24000005_at	PsAffx.C24000005	-	-	1e+0	At4g36780	transcription regulator	C.G.	S.X.	Please select
0.05	1e+0	34	Gma.15782.1.A1_at	CD407490	-	-	7e-1	At2g33720	transcription factor	C.G.	S.X.	Please select
0.03	5e+0	32	Gma.667.2.S1_at	BQ252908	-	-	6e-2	At3g51960	bZIP family transcription factor	C.G.	S.X.	Please select
0.02	5e+0	32	Gma.15225.1.S1_s_at	CD405256	-	-	9e-18	At4g34730	ribosome-binding factor A family protein	C.G.	S.X.	Please select
0.04	2e+1	30	PsAffx.psMC005xF07f_s_at	PsAffx.psMC005xF07f	-	-	3e+0	At3g46613	RTFL4 (ROTUNDIFOLIA LIKE 4)	C.G.	S.X.	Please select
0.02	2e+1	30	PsAffx.C65000044_at	PsAffx.C65000044	-	-	2e+0	At2g31280	basic helix-loop-helix (bHLH) protein-related	C.G.	S.X.	Please select
0.00	2e+1	30	PsAffx.C55000005_at	PsAffx.C55000005	-	-	1e-18	At1g80070	SUS2 (ABNORMAL SUSPENSOR 2)	C.G.	S.X.	Please select
0.02	2e+1	30	PsAffx.C307000002_at	PsAffx.C307000002	-	-	2e+0	At1g75160	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	2e-11	69	Arabidopsis thaliana	At4g20410	827789	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	Encodes a member of the gamma-soluble NSF attachment protein (gSNAP) gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	1e-16	85	Hordeum vulgare	Contig8884_at	Contig8884	-	-	3e-3	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	C.G.	S.X.	Please select
0.08	1e-13	77	Oryza sativa	Os04g0618500	AK103625.1	-	Gamma-soluble NSF attachment protein (Gamma-SNAP)(N-ethylmaleimide- sensitive factor attachment protein,gamma)	4e-5	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	2e-30	133	Populus trichocarpa	Ptp.5426.1.S1_at	CA934067	hypothetical protein	-	3e-21	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	3e-10	65	Triticum aestivum	Ta.8144.1.S1_at	CK172037	-	-	3e-3	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1608882_at	CA816983	hypothetical protein LOC100252835	-	1e+0	At5g43860	ATCLH2	C.G.	S.X.	Please select
0.07	6e-3	40	Zea mays	Zm.867.1.A1_at	AY105682.1	hypothetical protein LOC100273308	-	4e-8	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage