Gene omics information

Query gene ID	GmaAffx.36972.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.84	92.6	GmaAffx.36972.2.S1_at	BI699120	-	-	3e+0	At5g41810	unknown protein	S.X.	H.G.	Please select
0.51	72.3	Gma.12441.1.S1_at	BM523928	-	-	9e-1	Atmg00850	-	S.X.	H.G.	Please select
0.42	59.3	GmaAffx.22160.1.S1_at	BE823734	-	-	8e-7	At5g56180	ATARP8 (ACTIN-RELATED PROTEIN 8)	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.90258.1.S1_s_at	CF805983	protein kinase	-	7e-64	At5g63650	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	S.X.	H.G.	Please select
0.35	48.6	GmaAffx.82565.1.S1_at	BQ786205	-	-	5e-1	At5g16710	DHAR3 (dehydroascorbate reductase 1)	S.X.	H.G.	Please select
0.33	46.1	Gma.3331.1.S1_at	CB063400	-	-	2e-3	At3g55980	SZF1 (SALT-INDUCIBLE ZINC FINGER 1)	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.73927.1.S1_at	AW156717	-	-	4e-7	At2g21620	RD2	S.X.	H.G.	Please select
0.32	43.7	GmaAffx.81888.1.S1_at	BE210383	serine/threonine kinase-related protein	-	5e-7	At4g23270	protein kinase family protein	S.X.	H.G.	Please select
0.32	43.7	Gma.11164.1.S1_at	AW350722	Peroxisomal 3-ketoacyl-CoA thiolase precursor	-	1e-85	At1g04710	PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4)	S.X.	H.G.	Please select
0.30	40.4	Gma.10495.1.A1_at	BG511781	-	-	5e+0	At4g20370	TSF (TWIN SISTER OF FT)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.4	99.5	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
9.2	99.2	GSM292837	17_1479.1L.R290U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.0	99.0	GSM209579	susceptible_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.5	98.9	GSM201124	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.8	98.7	GSM209578	resistant_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.9	98.5	GSM293137	4_C053.1O.R9O3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM292840	1_1487.1L.R294U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM294279	32_3161.2I.R9I3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM292842	21_1443.1L.R271L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	7e-70	264	GmaAffx.36972.1.S1_at	BQ079450	-	-	7e-5	At5g37420	AGL105	C.G.	S.X.	Please select
0.31	4e-19	95	Gma.10307.1.S1_at	CA936845	-	-	2e-1	At5g19790	RAP2.11 (related to AP2 11)	C.G.	S.X.	Please select
0.02	3e-1	36	PsAffx.C4000173_at	PsAffx.C4000173	-	-	2e-1	At3g19595	phosphoprotein phosphatase	C.G.	S.X.	Please select
0.03	3e-1	36	Gma.15812.1.S1_at	AW350894	-	-	1e-13	At5g03220	transcriptional co-activator-related	C.G.	S.X.	Please select
0.03	1e+0	34	PsAffx.C38000037_at	PsAffx.C38000037	-	-	1e+0	At4g03965	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C290000011_at	PsAffx.C290000011	-	-	1e+0	At2g31850	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C194000011_at	PsAffx.C194000011	-	-	9e-1	At1g15400	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	HgAffx.12252.1.S1_at	CB376315	-	-	5e+0	At3g16895	-	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.2857.1.S1_at	BG551684	-	-	1e-18	At1g43800	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At5g41810	834186	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	38	Hordeum vulgare	Contig21246_at	Contig21246	-	-	3e-2	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select
0.02	4e-1	36	Oryza sativa	Os10g0104500	AK122080.1	-	Notchless-related	7e-14	At5g52820	WD-40 repeat family protein / notchless protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	5e-12	71	Populus trichocarpa	PtpAffx.123395.1.S1_at	CA824573	-	-	7e-2	At2g24440	selenium binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.43839.1.S1_at	BE492250	-	-	6e-1	At3g48120	unknown protein	C.G.	S.X.	Please select
0.06	3e-4	44	Vitis vinifera	1620078_at	CD798888	hypothetical protein LOC100259386	-	2e-2	At5g60550	GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2)	C.G.	S.X.	Please select
0.06	9e-2	36	Zea mays	ZmAffx.517.1.S1_at	AI711601	Hypothetical protein LOC100193129	-	8e-1	At4g10290	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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