CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.35002.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 GmaAffx.35002.1.S1_at AW759742 - - 6e-3 At1g56350 peptide chain release factor, putative S.X. H.G.
0.16 19.7 Gma.5672.4.S1_at CD396011 - - 2e-65 At1g75630 AVA-P4 S.X. H.G.
0.10 13.0 Gma.360.1.S1_at AW156714 - - 6e-11 At5g18850 unknown protein S.X. H.G.
0.03 5.8 Gma.7199.1.S1_at AI443555 - - 7e-56 At4g29490 aminopeptidase/ manganese ion binding S.X. H.G.
0.02 4.5 Gma.1434.1.S1_at AW349400 - - 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) S.X. H.G.
0.01 3.4 Gma.17053.2.S1_s_at AW348911 glyceraldehyde-3-phosphate dehydrogenase /// glyceraldehyde-3-dehydrogenase C subunit - 4e-166 At1g13440 GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.5 99.7 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
17.4 99.7 GSM309343 transgenic RNAiOleosin, biol rep 1, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
17.0 99.7 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
16.1 99.6 GSM309341 Wild type 1 GSE12300 Suppression of oleosin in soybean cotyledon
14.9 99.6 GSM309346 transgenic RNAiOleosin, biol rep 2, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon
14.0 99.6 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
12.1 99.5 GSM238055 Soybean-PS46R-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
12.0 99.4 GSM309344 transgenic RNAiOleosin, biol rep 1, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon
11.6 99.4 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
10.4 99.3 GSM309345 transgenic RNAiOleosin, biol rep 2, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 GmaAffx.52737.1.S1_at AW185177 - - 3e+0 At1g58160 jacalin lectin family protein C.G. S.X.
0.03 2e+0 34 GmaAffx.31738.1.A1_at BU549948 transcription factor bZIP98 /// bZIP transcription factor bZIP99 - 1e+0 At5g57050 ABI2 (ABA INSENSITIVE 2) C.G. S.X.
0.01 8e+0 32 PsAffx.C78000018_at PsAffx.C78000018 - - 5e-2 At1g05930 DNA binding C.G. S.X.
0.01 8e+0 32 PsAffx.C293000007_at PsAffx.C293000007 - - 6e-4 At4g33200 XI-I C.G. S.X.
0.03 8e+0 32 GmaAffx.9161.3.S1_at BI423968 - - 1e+0 At2g21610 pectinesterase family protein C.G. S.X.
0.03 8e+0 32 GmaAffx.85382.1.S1_s_at BI945154 Sali3-2 - 2e+0 At5g42070 unknown protein C.G. S.X.
0.02 8e+0 32 GmaAffx.76585.2.S1_at BG157266 - - 4e-8 At1g22860 unknown protein C.G. S.X.
0.02 8e+0 32 GmaAffx.52719.1.S1_at BE658609 - - 2e-15 At3g52440 Dof-type zinc finger domain-containing protein C.G. S.X.
0.03 8e+0 32 GmaAffx.50612.1.A1_at BI967263 - - 1e+1 At3g21352 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 6e-3 42 Arabidopsis thaliana At1g56350 842089 peptide chain release factor, putative F:translation release factor activity, codon specific, translation release factor activity;P:translational termination;C:cytoplasm;OBMFPV - - - C.G. S.X.
0.13 8e-13 73 Hordeum vulgare Contig17141_at Contig17141 - - 1e-26 At1g56350 peptide chain release factor, putative C.G. S.X.
0.15 1e-5 52 Oryza sativa Os03g0305700 AK073807.1 - Peptide chain release factor 2 5e-24 At1g56350 peptide chain release factor, putative C.G. S.X.
0.37 5e-50 198 Populus trichocarpa PtpAffx.210857.1.S1_at pmrna21321 hypothetical protein - 1e-38 At1g56350 peptide chain release factor, putative C.G. S.X.
0.14 2e-8 59 Triticum aestivum TaAffx.111026.1.S1_at CA649591 - - 5e-2 At1g56350 peptide chain release factor, putative C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1616311_at CF608715 hypothetical protein LOC100243463 - 5e-21 At5g60620 phospholipid/glycerol acyltransferase family protein C.G. S.X.
0.06 4e-5 48 Zea mays Zm.4714.1.A1_at AI738144 peptide chain release factor 2 - 3e-14 At1g56350 peptide chain release factor, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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