CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.34491.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 71.7 GmaAffx.34491.1.S1_at BE820865 - - 9e-13 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein S.X. H.G.
0.67 86.1 GmaAffx.89144.1.A1_s_at CK605580 - - 2e-21 At3g60600 VAP (VESICLE ASSOCIATED PROTEIN) S.X. H.G.
0.53 74.2 GmaAffx.33620.2.S1_at BM731339 - - 2e-14 At1g51730 RWD domain-containing protein S.X. H.G.
0.48 67.7 GmaAffx.92769.1.S1_s_at CF808494 - - 1e-75 At3g19760 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative S.X. H.G.
0.43 60.6 GmaAffx.85638.1.S1_at BF425777 - - 4e-13 At5g55000 FIP2 S.X. H.G.
0.43 60.6 GmaAffx.93491.1.S1_s_at CF809216 - - 3e-1 At4g38280 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.0 98.5 GSM309343 transgenic RNAiOleosin, biol rep 1, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
5.1 98.1 GSM309344 transgenic RNAiOleosin, biol rep 1, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon
4.2 97.4 GSM292178 34-1006.1A.R003P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8 97.0 GSM309346 transgenic RNAiOleosin, biol rep 2, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon
3.6 96.7 GSM309528 storage protein suppression expt, control tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.5 96.6 GSM309345 transgenic RNAiOleosin, biol rep 2, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
3.4 96.4 GSM293335 24_1568.1Q.R156P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293613 42_2054.2B.R307P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293390 74_1588.1Q.R230P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM309342 Wild type 2 GSE12300 Suppression of oleosin in soybean cotyledon
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 0 880 GmaAffx.92207.1.S1_at CF807924 - - 6e-24 At1g54320 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein C.G. S.X.
0.33 2e-150 533 Gma.4166.1.A1_at BQ473837 - - 2e-11 At1g79450 ALIS5 (ALA-Interacting Subunit 5) C.G. S.X.
0.33 2e-150 533 Gma.4166.1.S1_at AI748072 - - 2e-5 At3g12740 ALIS1 (ALA-INTERACTING SUBUNIT 1) C.G. S.X.
0.33 2e-150 533 Gma.4166.1.S1_s_at AI748072 - - 2e-5 At3g12740 ALIS1 (ALA-INTERACTING SUBUNIT 1) C.G. S.X.
0.44 3e-78 293 GmaAffx.22343.1.S1_at CD390536 - - 2e-13 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein C.G. S.X.
0.17 7e-39 163 GmaAffx.22343.2.S1_at BE346602 - - 9e-5 At3g12740 ALIS1 (ALA-INTERACTING SUBUNIT 1) C.G. S.X.
0.17 7e-39 163 GmaAffx.22343.2.S1_s_at BE346602 - - 9e-5 At3g12740 ALIS1 (ALA-INTERACTING SUBUNIT 1) C.G. S.X.
0.19 6e-36 153 GmaAffx.22343.3.S1_s_at BI787482 - - 2e-23 At3g12740 ALIS1 (ALA-INTERACTING SUBUNIT 1) C.G. S.X.
0.01 1e+0 36 GmaAffx.93084.1.S1_at CF806262 - - 7e+0 At5g18380 40S ribosomal protein S16 (RPS16C) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 9e-13 75 Arabidopsis thaliana At1g16360 838205 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein F:unknown;P:biological_process unknown;C:membrane;MOFP - - - C.G. S.X.
0.12 7e-18 91 Hordeum vulgare Contig10055_at Contig10055 - - 5e-8 At3g12740 ALIS1 (ALA-INTERACTING SUBUNIT 1) C.G. S.X.
0.10 5e-19 97 Oryza sativa Os06g0665000 AK104873.1 - Eukaryotic protein of unknown function DUF284family protein 4e-6 At1g79450 ALIS5 (ALA-Interacting Subunit 5) C.G. S.X.
0.21 1e-34 149 Populus trichocarpa PtpAffx.209201.1.S1_at pmrna18195 hypothetical protein - 7e-20 At3g12740 ALIS1 (ALA-INTERACTING SUBUNIT 1) C.G. S.X.
0.08 2e-13 77 Triticum aestivum Ta.11609.1.S1_x_at BE412187 - - 9e-7 At3g12740 ALIS1 (ALA-INTERACTING SUBUNIT 1) C.G. S.X.
0.20 1e-46 186 Vitis vinifera 1607867_at CF209466 hypothetical protein LOC100267404 - 3e-8 At1g54320 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein C.G. S.X.
0.12 6e-9 61 Zea mays Zm.8459.1.A1_at BM078128 cell division control protein 50 - 1e-9 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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