Gene omics information

Query gene ID	GmaAffx.33627.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.98	100.0	GmaAffx.33627.1.S1_at	BU926573	-	-	3e-3	At3g50550	unknown protein	S.X.	H.G.	Please select
0.57	78.8	GmaAffx.28763.1.S1_at	BQ630517	-	-	2e-1	At1g62040	ATG8C (autophagy 8c)	S.X.	H.G.	Please select
0.37	51.7	GmaAffx.72279.2.A1_at	BU549417	-	-	4e+0	At5g47310	unknown protein	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.567.1.S1_at	BE440401	-	-	4e-1	At4g12320	CYP706A6	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.92214.1.S1_s_at	CF807939	-	-	1e-30	At1g10200	WLIM1	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.16168.1.A1_at	CD408636	-	-	4e+0	At3g49130	RNA binding	S.X.	H.G.	Please select
0.29	39.0	Gma.12424.1.S1_s_at	AW706222	-	-	3e-2	At3g27010	AT-TCP20	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.69540.1.S1_at	BQ473403	-	-	2e-10	At3g49690	MYB84 (MYB DOMAIN PROTEIN 84)	S.X.	H.G.	Please select
0.23	29.9	GmaAffx.85429.1.S1_at	BI320453	-	-	2e+0	At1g59530	ATBZIP4 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 4)	S.X.	H.G.	Please select
0.22	28.1	GmaAffx.74781.1.S1_at	BE658510	-	-	4e-28	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
52.8	99.9	GSM147935	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
34.9	99.9	GSM294218	69_3140.2H.R9H3P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
27.2	99.8	GSM294432	87_3176.2J.SLJ3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
26.7	99.8	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
22.6	99.8	GSM294650	23_3220.2M.SLM1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.8	99.7	GSM171641	1_Z.I.M.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
19.8	99.7	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
18.2	99.7	GSM294607	74_2540.2L.R156P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.6	99.7	GSM294244	92_2340.2H.R202P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.3	99.7	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-4	46	GmaAffx.56121.1.A1_at	BU544917	-	-	5e-2	At1g34440	unknown protein	C.G.	S.X.	Please select
0.02	5e-3	42	PsAffx.C103000063_at	PsAffx.C103000063	-	-	3e-1	At5g51650	unknown protein	C.G.	S.X.	Please select
0.02	5e-3	42	GmaAffx.70938.1.S1_at	BU544224	-	-	1e-8	At5g64390	HEN4 (HUA ENHANCER 4)	C.G.	S.X.	Please select
0.04	5e-3	42	GmaAffx.1301.63.S1_at	BI702045	-	-	4e-4	At1g80450	VQ motif-containing protein	C.G.	S.X.	Please select
0.01	2e-2	40	PsAffx.C6000179_at	PsAffx.C6000179	-	-	2e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	2e-2	40	PsAffx.C130000007_at	PsAffx.C130000007	-	-	2e-1	At2g35910	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	2e-2	40	HgAffx.14960.1.S1_at	AF083554.1	-	-	3e-3	At3g26790	FUS3 (FUSCA 3)	C.G.	S.X.	Please select
0.05	2e-2	40	GmaAffx.83545.1.A1_at	BU551298	-	-	2e-2	At1g64385	unknown protein	C.G.	S.X.	Please select
0.05	8e-2	38	PsAffx.CL1394Contig1_s_at	PsAffx.CL1394Contig1	-	-	9e-1	At1g05420	OFP12 (OVATE FAMILY PROTEIN 12)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-3	42	Arabidopsis thaliana	At3g50550	824219	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-3	42	Hordeum vulgare	Contig26531_at	Contig26531	-	-	7e-5	At3g50550	unknown protein	C.G.	S.X.	Please select
0.06	1e-4	48	Oryza sativa	OsAffx.18062.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	8e-5	48	Populus trichocarpa	PtpAffx.211786.1.S1_at	pmrna23119	hypothetical protein	-	3e+0	At5g44578	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	1e-6	54	Triticum aestivum	TaAffx.119495.1.S1_at	CA600709	-	-	2e-2	At5g04910	unknown protein	C.G.	S.X.	Please select
0.04	6e-2	36	Vitis vinifera	1619806_at	CB340138	-	-	8e-1	At3g60670	zinc-binding protein, putative	C.G.	S.X.	Please select
0.05	4e-1	34	Zea mays	Zm.6246.2.A1_at	AI677558	-	-	9e-7	At2g22080	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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