Gene omics information

Query gene ID	GmaAffx.31901.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.31901.1.A1_at	BE657929	-	-	5e-3	At4g33660	unknown protein	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.34785.26.A1_x_at	BE661741	HMG-1-like protein	-	9e-4	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	S.X.	H.G.	Please select
0.25	32.6	Gma.17588.3.S1_x_at	BI426637	-	-	1e-59	At1g80490	TPR1 (TOPLESS-RELATED 1)	S.X.	H.G.	Please select
0.21	26.6	GmaAffx.5376.10.S1_s_at	BU082924	-	-	2e-10	At2g18600	RUB1-conjugating enzyme, putative	S.X.	H.G.	Please select
0.17	21.2	Gma.7528.1.S1_s_at	CD415645	-	-	5e-10	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	S.X.	H.G.	Please select
0.13	16.3	Gma.7733.1.S1_at	BU549841	-	-	3e-7	At3g55070	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.7	99.6	GSM201098	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
14.2	99.6	GSM201126	Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
12.7	99.5	GSM201118	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
12.3	99.5	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
11.8	99.4	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
10.0	99.3	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.0	99.0	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.6	98.9	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.5	98.7	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.4	98.6	GSM201100	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	9e-129	460	GmaAffx.31901.1.S1_at	CA800539	-	-	5e-3	At4g33660	unknown protein	C.G.	S.X.	Please select
0.01	3e-2	40	PsAffx.C928000001_at	PsAffx.C928000001	-	-	9e-2	At4g33660	unknown protein	C.G.	S.X.	Please select
0.03	3e-2	40	GmaAffx.92499.1.S1_s_at	CF809203	Win gene encoding wound-induced protein	-	2e-15	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.03	3e-2	40	GmaAffx.90323.1.A1_s_at	CF806048	-	-	4e-7	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.03	3e-2	40	GmaAffx.90323.1.S1_at	CF806417	-	-	4e-7	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.03	3e-2	40	GmaAffx.5376.1.S1_s_at	BI321591	-	-	2e-12	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.02	3e-2	40	Gma.12401.1.S1_at	AW349517	-	-	6e-1	At1g78410	VQ motif-containing protein	C.G.	S.X.	Please select
0.03	1e-1	38	Gma.5575.2.S1_at	CD403903	-	-	7e-30	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.02	1e-1	38	Gma.16684.1.S1_at	AW100646	-	-	3e-64	At5g35160	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	5e-3	42	Arabidopsis thaliana	At4g33660	829507	unknown protein	F:unknown;P:unknown;C:unknown;MPOFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-4	46	Hordeum vulgare	Contig17523_at	Contig17523	-	-	7e-2	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.06	3e-3	44	Oryza sativa	OsAffx.12384.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-3	44	Populus trichocarpa	PtpAffx.200210.1.S1_x_at	pmrna396	hypothetical protein	-	9e-1	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e-3	42	Triticum aestivum	Ta.830.1.S1_s_at	CD906189	-	-	4e+0	At3g02480	ABA-responsive protein-related	C.G.	S.X.	Please select
0.06	2e-2	38	Vitis vinifera	1620940_at	CF201899.1	-	-	2e+1	At5g66990	RWP-RK domain-containing protein	C.G.	S.X.	Please select
0.04	9e-3	40	Zea mays	Zm.16259.3.A1_a_at	AI395995	hypothetical protein LOC100273269	-	2e+0	At3g20865	AGP40 (arabinogalactan-protein 40)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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