Gene omics information

Query gene ID	GmaAffx.31571.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	74.2	GmaAffx.31571.1.S1_at	BU551140	-	-	2e+0	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	S.X.	H.G.	Please select
0.86	93.0	Gma.8673.1.S1_at	BE821944	-	-	3e-114	At1g51720	glutamate dehydrogenase, putative	S.X.	H.G.	Please select
0.80	91.5	Gma.1648.2.A1_a_at	CD404308	-	-	1e-4	At1g10820	unknown protein	S.X.	H.G.	Please select
0.57	78.8	Gma.13242.1.S1_at	CD396483	NAC domain protein	-	1e-5	At5g64060	anac103 (Arabidopsis NAC domain containing protein 103)	S.X.	H.G.	Please select
0.57	78.8	Gma.2802.1.S1_at	CD396311	-	-	2e-29	At3g06810	IBR3 (IBA-RESPONSE 3)	S.X.	H.G.	Please select
0.56	78.2	Gma.1806.1.S1_at	BI971557	-	-	5e-26	At2g23980	ATCNGC6	S.X.	H.G.	Please select
0.44	63.3	Gma.7026.2.S1_a_at	BG363077	-	-	1e-13	At1g28320	DEG15	S.X.	H.G.	Please select
0.42	59.3	GmaAffx.661.1.S1_at	BI969786	-	-	2e+0	At1g67080	ABA4 (abscisic acid (ABA)-deficient 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	98.5	GSM293613	42_2054.2B.R307P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM293639	66_2084.2B.R288P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM292303	4_1190.1E.R115P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293560	73_2004.2A.R270P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293216	96_1146.1O.R092P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292573	83_C128.1H.V7H1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM293307	89_1202.1P.R124P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM292178	34-1006.1A.R003P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM292576	86_1283.1H.R180U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM292224	18_C022.1B.SLB1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	4e-8	59	GmaAffx.9569.1.S1_at	BI974798	-	-	4e-6	At1g77850	ARF17 (AUXIN RESPONSE FACTOR 17)	C.G.	S.X.	Please select
0.03	2e-1	38	GmaAffx.84491.2.A1_at	AW101089	-	-	2e-1	At4g09462	-	C.G.	S.X.	Please select
0.03	6e-1	36	GmaAffx.15941.1.S1_at	AI460954	-	-	5e-1	At3g57340	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	6e-1	36	Gma.8642.1.S1_at	BU763678	-	-	2e-9	At1g62020	coatomer protein complex, subunit alpha, putative	C.G.	S.X.	Please select
0.03	3e+0	34	HgAffx.22174.1.S1_at	BI396906	-	-	1e+1	At5g18800	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	C.G.	S.X.	Please select
0.03	3e+0	34	HgAffx.20838.1.A1_at	CK349065	-	-	7e-1	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	C.G.	S.X.	Please select
0.02	3e+0	34	HgAffx.13926.1.S1_at	CD748330	-	-	3e-1	At1g05990	calcium-binding protein, putative	C.G.	S.X.	Please select
0.03	3e+0	34	GmaAffx.88945.1.A1_at	CK605738	-	-	3e+0	At1g07745	RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D)	C.G.	S.X.	Please select
0.03	3e+0	34	GmaAffx.88945.1.S1_at	CK605738	-	-	3e+0	At1g07745	RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g46940	823847	deoxyuridine 5'-triphosphate nucleotidohydrolase family	F:hydrolase activity, dUTP diphosphatase activity;P:2'-deoxyribonucleotide metabolic process, dUTP metabolic process;C:cellular_component unknown;BOVMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	9e-1	34	Hordeum vulgare	HY07G24u_at	HY07G24u	-	-	2e+0	At2g47350	PAPA-1-like family protein / zinc finger (HIT type) family protein	C.G.	S.X.	Please select
0.03	4e+0	34	Oryza sativa	OsAffx.28649.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	2e-10	67	Populus trichocarpa	PtpAffx.102317.1.A1_at	CV229701	hypothetical protein	-	1e+0	At2g39540	gibberellin-regulated family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	7e+0	32	Triticum aestivum	TaAffx.115792.1.S1_at	CA615969	-	-	2e-1	At3g02870	VTC4	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1617408_at	CB003255	-	-	9e-8	At4g12830	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	ZmAffx.618.1.A1_at	AI715046	-	-	1e+1	At5g46940	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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