CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.31209.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 GmaAffx.31209.1.S1_at BE822784 - - 3e-1 At4g24230 ACBP3 (ACYL-COA-BINDING DOMAIN 3) S.X. H.G.
0.91 98.6 Gma.7474.1.A1_at BU547968 - - 5e-3 At4g16563 aspartyl protease family protein S.X. H.G.
0.91 98.6 GmaAffx.81930.1.S1_at BG789998 - - 1e-2 At1g12665 - S.X. H.G.
0.67 86.1 Gma.3111.2.S1_a_at BQ740743 - - 5e-27 At1g07570 APK1A S.X. H.G.
0.63 82.9 Gma.16683.1.S1_at BG510367 - - 7e-16 At5g24490 30S ribosomal protein, putative S.X. H.G.
0.50 71.7 Gma.13490.2.A1_at CD399334 - - 2e-1 At2g38695 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
204.8 100.0 GSM209578 resistant_24hours_rep1 failed QC GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
186.6 100.0 GSM209579 susceptible_24hours_rep1 failed QC GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
137.4 100.0 GSM209584 susceptible_6hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
100.6 100.0 GSM209583 resistant_6hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
72.8 100.0 GSM209585 resistant_12hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
64.8 100.0 GSM209588 susceptible_24hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
53.7 99.9 GSM209595 susceptible_12hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
50.3 99.9 GSM209591 mock_0hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
42.3 99.9 GSM209586 susceptible_12hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
35.1 99.9 GSM209582 mock_0hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 3e-14 79 GmaAffx.86168.1.S1_at BQ273613 - - 9e-1 At1g51670 unknown protein C.G. S.X.
0.02 1e-1 38 Gma.10911.1.S1_at AW396425 - - 3e-3 At1g58180 carbonic anhydrase family protein / carbonate dehydratase family protein C.G. S.X.
0.03 4e-1 36 GmaAffx.8845.2.S1_at BF597277 - - 8e-5 At2g39970 peroxisomal membrane protein (PMP36) C.G. S.X.
0.02 2e+0 34 PsAffx.C25000112_at PsAffx.C25000112 - - 5e-2 At1g03790 SOM (SOMNUS) C.G. S.X.
0.03 2e+0 34 GmaAffx.84888.1.S1_at AW508144 - - 3e+0 Atcg01120 - C.G. S.X.
0.03 2e+0 34 GmaAffx.48580.1.S1_at AW568684 - - 2e-7 At5g07350 tudor domain-containing protein / nuclease family protein C.G. S.X.
0.03 2e+0 34 GmaAffx.41482.1.S1_at BE658054 - - 5e+0 At5g24920 AtGDU5 (Arabidopsis thaliana GLUTAMINE DUMPER 5) C.G. S.X.
0.03 2e+0 34 GmaAffx.33488.1.S1_at BE021485 - - 4e-12 At3g26950 unknown protein C.G. S.X.
0.02 2e+0 34 Gma.8340.1.S1_at AW201258 - - 3e-3 At1g72390 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 36 Arabidopsis thaliana At4g24230 828524 ACBP3 (ACYL-COA-BINDING DOMAIN 3) acyl-CoA-binding protein ACBP3. Localized extracellularly in transiently expressed tobacco BY-2 cells and onion epidermal cells. Binds arachidonyl-CoA with high affinity. - - - C.G. S.X.
0.03 2e+0 32 Hordeum vulgare rbaal27b24_at rbaal27b24 - - 4e-15 At2g37620 ACT1 (ACTIN 1) C.G. S.X.
0.02 9e+0 32 Oryza sativa OsAffx.3142.1.S1_at - - - 0 C.G. S.X.
0.36 2e-21 103 Populus trichocarpa PtpAffx.50042.1.A1_at CV261321 hypothetical protein - 1e-4 At3g54720 AMP1 (ALTERED MERISTEM PROGRAM 1) C.G. S.X.
0.05 3e-1 36 Triticum aestivum TaAffx.105292.1.S1_at CA736604 - - 2e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.03 3e-1 34 Vitis vinifera 1613531_at CF606004 hypothetical protein LOC100243322 - 1e+0 At4g37830 cytochrome c oxidase-related C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.914.1.A1_at AI770970 - - 2e-20 At5g13160 PBS1 (avrPphB susceptible 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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