Gene omics information

Query gene ID	GmaAffx.30833.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.1	GmaAffx.30833.1.S1_at	AW509222	-	-	1e-5	At5g55640	unknown protein	S.X.	H.G.	Please select
0.51	72.3	Gma.14354.2.S1_at	BI472159	-	-	3e-53	At5g59840	Ras-related GTP-binding family protein	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.22627.1.S1_x_at	BG352722	-	-	4e-2	At1g18520	TET11 (TETRASPANIN11)	S.X.	H.G.	Please select
0.43	60.6	Gma.7259.2.S1_at	BQ610944	-	-	7e+0	At5g45428	CPuORF24 (Conserved peptide upstream open reading frame 24)	S.X.	H.G.	Please select
0.42	59.3	GmaAffx.91977.1.S1_s_at	CF807702	-	-	3e-63	At4g02580	NADH-ubiquinone oxidoreductase 24 kDa subunit, putative	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.22627.1.S1_at	BG352722	-	-	4e-2	At1g18520	TET11 (TETRASPANIN11)	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.91170.1.S1_x_at	CF806895	-	-	5e-58	At3g46060	ATRAB8A	S.X.	H.G.	Please select
0.37	51.7	Gma.10779.2.S1_at	BU578186	-	-	2e-1	At1g55546	unknown protein	S.X.	H.G.	Please select
0.36	50.8	Gma.17299.3.S1_a_at	BI973058	-	-	1e-24	At1g47640	unknown protein	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.92555.1.S1_s_at	CF808280	-	-	2e-113	At5g20020	RAN2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	97.6	GSM292873	4_1486.1L.R293P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.2	97.4	GSM244908	3_SLO.M1W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.8	97.0	GSM244779	10_SLO.M1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.8	97.0	GSM244854	28_SLO.I3U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.6	96.7	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.5	96.6	GSM244788	12_V71.M1W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.4	96.4	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.3	96.2	GSM293292	75_1530.1P.R005P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM244799	15_CON.M1W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	GmaAffx.33194.1.S1_at	BQ629228	-	-	2e-11	At5g19980	integral membrane family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Gma.11203.1.S1_a_at	BE657634	WRKY39 protein /// WRKY49 protein	-	8e-32	At2g38470	WRKY33	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C43000092_at	PsAffx.C43000092	-	-	5e-1	At5g02260	ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.74229.1.S1_at	AW348139	-	-	4e-1	At4g22890	PGR5-LIKE A	C.G.	S.X.	Please select
0.01	1e+0	34	Gma.8421.1.S1_at	D50870.1	mitotic cyclin a2-type	-	1e-30	At1g77390	CYCA1	C.G.	S.X.	Please select
0.02	5e+0	32	PsAffx.CL178Contig1_at	PsAffx.CL178Contig1	-	-	1e-2	At1g04410	malate dehydrogenase, cytosolic, putative	C.G.	S.X.	Please select
0.02	5e+0	32	HgAffx.3907.1.S1_at	CB375673	-	-	2e+0	At5g65220	ribosomal protein L29 family protein	C.G.	S.X.	Please select
0.03	5e+0	32	HgAffx.3578.1.S1_at	AF469059.1	-	-	2e+0	Atcg01040	-	C.G.	S.X.	Please select
0.03	5e+0	32	HgAffx.21347.1.S1_at	CA939149	-	-	1e+0	At1g59860	17.6 kDa class I heat shock protein (HSP17.6A-CI)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	1e-5	50	Arabidopsis thaliana	At5g55640	835658	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e+0	30	Hordeum vulgare	HVSMEm0007C24r2_at	HVSMEm0007C24r2	-	-	3e+0	At5g57815	cytochrome c oxidase subunit 6b, putative	C.G.	S.X.	Please select
0.07	3e-5	50	Oryza sativa	Os03g0595200	NM_184956.1	-	Conserved hypothetical protein	3e-1	At3g51750	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	1e-15	83	Populus trichocarpa	Ptp.4499.1.S1_at	CN519933	hypothetical protein	-	3e-8	At5g55640	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.111612.1.S1_at	CA636947	-	-	4e+0	At5g16660	unknown protein	C.G.	S.X.	Please select
0.07	2e-8	57	Vitis vinifera	1621111_at	BQ798687	hypothetical protein LOC100254821	-	2e+0	At4g33145	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.4744.1.A1_at	CA402773	FHA domain containing protein	-	5e+0	At4g32270	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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