Gene omics information

Query gene ID	GmaAffx.29942.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	78.2	GmaAffx.29942.1.S1_at	AW567850	-	-	1e+0	At2g04870	unknown protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.62630.1.S1_at	BE329740	-	-	9e-1	At5g23035	-	S.X.	H.G.	Please select
0.15	18.7	GmaAffx.71735.1.S1_at	BI973751	-	-	4e-7	At2g45240	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	S.X.	H.G.	Please select
0.08	11.0	Gma.1143.1.A1_at	AW278604	-	-	4e-6	At2g16860	GCIP-interacting family protein	S.X.	H.G.	Please select
0.08	11.0	GmaAffx.18005.1.S1_at	BU765846	-	-	2e-13	At4g27630	GTG2 (GPCR-TYPE G PROTEIN 2)	S.X.	H.G.	Please select
0.04	7.0	GmaAffx.45437.1.S1_at	AI960629	biotin synthase	-	7e-21	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.7	99.3	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM294426	81_3163.2J.SLJ1U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294427	82_2447.2J.R119L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM209595	susceptible_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.5	96.6	GSM294406	63_2451.2J.R290U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM294425	80_3168.2J.R9J1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM294436	90_2445.2J.R294U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM294430	85_2455.2J.R220U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	2e-40	167	Gma.1147.1.S1_at	BE824466	-	-	6e-4	At5g58220	TTL (Transthyretin-Like protein)	C.G.	S.X.	Please select
0.05	1e-1	38	GmaAffx.52169.1.S1_at	CA936562	-	-	8e+0	At5g44900	transmembrane receptor	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C80000040_at	PsAffx.C80000040	-	-	8e-1	At2g40475	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C106000033_at	PsAffx.C106000033	-	-	4e-2	At1g50690	-	C.G.	S.X.	Please select
0.04	2e+0	34	GmaAffx.76153.1.S1_at	BM188281	-	-	3e+0	At2g44304	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	34	GmaAffx.54116.1.S1_at	AW831010	-	-	3e+0	At3g11930	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.04	2e+0	34	GmaAffx.53028.1.S1_at	AW507572	-	-	9e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.38961.1.S1_at	BU081740	-	-	4e-7	At5g16600	MYB43 (myb domain protein 43)	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.5170.1.A1_at	BQ628737	-	-	5e-9	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At2g04870	815034	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	34	Hordeum vulgare	Contig21929_at	Contig21929	-	-	3e-1	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.4517.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Populus trichocarpa	PtpAffx.69014.1.A1_at	CV273971	histone 2	-	5e-3	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e+0	32	Triticum aestivum	TaAffx.27578.1.S1_at	CA673741	-	-	1e+0	At4g08570	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1616838_at	BQ797792	-	-	3e-1	At1g12180	-	C.G.	S.X.	Please select
0.04	1e-1	36	Zea mays	Zm.963.1.S1_at	AY105204.1	hypothetical protein LOC100273769	-	4e-5	At5g58220	TTL (Transthyretin-Like protein)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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