CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.29692.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 71.7 GmaAffx.29692.1.S1_at AW348396 - - 3e+0 At4g01700 chitinase, putative S.X. H.G.
0.17 21.2 GmaAffx.25060.1.S1_at CD415199 - - 3e-1 At5g47650 ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) S.X. H.G.
0.09 12.0 GmaAffx.65661.1.S1_at BI700358 - - 1e+1 At5g08505 - S.X. H.G.
0.08 11.0 GmaAffx.636.1.S1_at BM523305 - - 1e+0 At3g46900 COPT2 S.X. H.G.
0.05 8.0 GmaAffx.29692.2.S1_at AI437572 - - 8e-1 At1g24260 SEP3 (SEPALLATA3) S.X. H.G.
0.01 3.4 Gma.7436.1.S1_at BU547698 - - 1e+0 At2g02850 ARPN (PLANTACYANIN) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.0 99.3 GSM293326 16_1591.1Q.R301U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.4 99.2 GSM294010 62_3103.2F.V7F3U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.9 99.2 GSM294171 34_2367.2H.R229U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.0 99.0 GSM293189 71_1127.1O.R081U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.6 98.9 GSM294545 18_2539.2L.R156U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.1 98.8 GSM293618 47_3027.2B.V7B2U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.9 98.8 GSM292549 61_1315.1H.R199U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3 98.6 GSM293599 2_3033.2B.V7B3L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2 98.6 GSM293915 63_2211.2E.R101L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0 98.5 GSM292909 82_1447.1L.R273U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.00 1e+0 34 PsAffx.C27000066_at PsAffx.C27000066 - - 1e+0 At1g19530 unknown protein C.G. S.X.
0.03 1e+0 34 GmaAffx.91620.1.S1_at CF807345 - - 5e-22 At2g18300 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.03 1e+0 34 GmaAffx.83377.2.S1_at BM893101 - - 2e-21 At4g34530 CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1) C.G. S.X.
0.03 1e+0 34 Gma.1528.1.S1_at CD403623 - - 2e-21 At2g18300 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.01 5e+0 32 PsAffx.C7000170_at PsAffx.C7000170 - - 2e-2 At4g24130 unknown protein C.G. S.X.
0.04 5e+0 32 HgAffx.3258.1.A1_at CK349433 - - 3e+0 At4g12790 ATP-binding family protein C.G. S.X.
0.04 5e+0 32 HgAffx.3258.1.S1_at CK349433 - - 3e+0 At4g12790 ATP-binding family protein C.G. S.X.
0.03 5e+0 32 HgAffx.10903.1.S1_at CB378235 - - 8e-5 At1g22330 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.04 5e+0 32 GmaAffx.90854.1.S1_at CF806579 - - 3e+0 At1g62225 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e+0 32 Arabidopsis thaliana At4g01700 828131 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVF - - - C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig25195_at Contig25195 - - 5e+0 At5g16170 unknown protein C.G. S.X.
0.03 7e+0 32 Oryza sativa OsAffx.25598.1.S1_x_at - - - 0 C.G. S.X.
0.34 1e-12 73 Populus trichocarpa PtpAffx.78230.1.A1_at CV264826 hypothetical protein - 7e-12 At4g01700 chitinase, putative C.G. S.X.
0.06 4e+0 32 Triticum aestivum TaAffx.105347.1.S1_at CA735805 - - 3e+1 Atmg01220 - C.G. S.X.
0.06 3e-1 34 Vitis vinifera 1608262_at AF053341.1 class I extracellular chitinase - 2e+0 At3g04180 germin-like protein, putative C.G. S.X.
0.03 1e+0 32 Zea mays Zm.9058.1.A1_at BM266530 - - 5e+0 At5g61030 GR-RBP3 (glycine-rich RNA-binding protein 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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