CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.2892.2.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 87.8 GmaAffx.2892.2.S1_at AW831940 - - 4e-1 At2g24400 auxin-responsive protein, putative / small auxin up RNA (SAUR_D) S.X. H.G.
0.67 86.1 GmaAffx.1301.88.S1_s_at BG041563 - - 4e-12 At5g15600 SP1L4 (SPIRAL1-LIKE4) S.X. H.G.
0.56 78.2 Gma.11254.1.S1_x_at CD391589 - - 9e+0 At5g45040 cytochrome c6 (ATC6) S.X. H.G.
0.55 76.3 GmaAffx.34174.1.S1_at BF071699 - - 6e-30 At3g17840 RLK902 S.X. H.G.
0.46 65.5 Gma.11254.3.S1_a_at BF069978 - - 4e+0 At4g13790 auxin-responsive protein, putative S.X. H.G.
0.42 59.3 Gma.11254.1.S1_a_at CD391589 - - 9e+0 At5g45040 cytochrome c6 (ATC6) S.X. H.G.
0.40 57.1 GmaAffx.69661.1.S1_at BQ741578 - - 2e-30 At1g16860 merozoite surface protein-related S.X. H.G.
0.35 48.6 GmaAffx.80309.1.S1_at AW756161 - - 2e-8 At1g74690 IQD31 (IQ-domain 31) S.X. H.G.
0.33 46.1 GmaAffx.79679.1.S1_at BG155341 - - 3e-32 At3g61130 GAUT1 (GALACTURONOSYLTRANSFERASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.0 99.7 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
17.8 99.7 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
16.7 99.7 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
16.2 99.6 GSM309528 storage protein suppression expt, control tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
15.5 99.6 GSM258499 Soybean shoot apical meristem, 4 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
13.4 99.5 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
13.2 99.5 GSM238048 Soybean-Mandarin-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
12.5 99.5 GSM309527 storage protein suppression expt, control tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
11.6 99.4 GSM238031 Soybean-2601R-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
10.2 99.3 GSM238051 Soybean-Mandarin-7-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 38 PsAffx.C121000026_at PsAffx.C121000026 - - 1e+1 At5g57820 protein binding / zinc ion binding C.G. S.X.
0.03 1e-1 38 GmaAffx.28186.1.S1_at BM269811 - - 3e-9 At4g33700 CBS domain-containing protein C.G. S.X.
0.01 2e+0 34 PsAffx.C78000010_at PsAffx.C78000010 - - 3e+0 At5g61230 ankyrin repeat family protein C.G. S.X.
0.03 2e+0 34 HgAffx.12241.1.S1_at CD748893 - - 2e-2 At1g27660 ethylene-responsive protein -related C.G. S.X.
0.02 2e+0 34 GmaAffx.51151.1.S1_at BU084124 - - 1e-4 At2g39340 SAC3/GANP family protein C.G. S.X.
0.02 2e+0 34 Gma.8009.1.S1_at AW185849 - - 6e-16 At3g08620 KH domain-containing protein C.G. S.X.
0.01 8e+0 32 PsAffx.C30000036_at PsAffx.C30000036 - - 4e-2 At5g28630 glycine-rich protein C.G. S.X.
0.03 8e+0 32 HgAffx.23322.1.S1_at BF014527 - - 4e+0 At3g04990 - C.G. S.X.
0.03 8e+0 32 GmaAffx.83424.1.A1_at BU544247 - - 2e-1 At1g08760 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Arabidopsis thaliana At2g24400 816976 auxin-responsive protein, putative / small auxin up RNA (SAUR_D) F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO - - - C.G. S.X.
0.04 1e-2 40 Hordeum vulgare Contig17794_at Contig17794 - - 3e-9 At2g30700 unknown protein C.G. S.X.
0.02 2e-1 38 Oryza sativa Os10g0534100 AK071890.1 - Conserved hypothetical protein 6e-8 At2g30700 unknown protein C.G. S.X.
0.41 4e-26 119 Populus trichocarpa PtpAffx.209574.1.S1_at pmrna18952 hypothetical protein - 3e-3 At1g61900 unknown protein C.G. S.X.
0.03 3e-2 40 Triticum aestivum Ta.24303.1.A1_at CD454649 - - 5e-1 At1g29110 cysteine proteinase, putative C.G. S.X.
0.03 7e+0 30 Vitis vinifera 1619956_at CB974049 - - 2e-1 At3g60540 sec61beta family protein C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.1291.1.S1_s_at 40794996-23 - - 2e-1 At5g39930 CLPS5 (CLP1-SIMILAR PROTEIN 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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