CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.2851.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.40 57.1 GmaAffx.2851.1.S1_at AW507525 - - 1e-5 At5g58930 unknown protein S.X. H.G.
0.56 78.2 HgAffx.17984.1.S1_at CB238710 - - 3e+0 At3g24860 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.53 74.2 PsAffx.psHB004xH08f_at PsAffx.psHB004xH08f - - 5e+0 At3g61840 unknown protein S.X. H.G.
0.50 71.7 HgAffx.19033.4.A1_at CK350593 - - 6e-2 At1g54410 dehydrin family protein S.X. H.G.
0.40 57.1 GmaAffx.10787.1.S1_at BU965232 - - 1e-2 At5g16790 - S.X. H.G.
0.40 57.1 HgAffx.19033.4.A1_x_at CK350593 - - 6e-2 At1g54410 dehydrin family protein S.X. H.G.
0.25 32.6 HgAffx.17965.1.S1_at CB278425 - - 2e+0 At2g23340 AP2 domain-containing transcription factor, putative S.X. H.G.
0.14 17.5 GmaAffx.90612.1.S1_at CF806337 - - 2e-14 At5g63470 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
44.3 99.9 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.5 99.5 GSM293082 81_C019.1N.R9N1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.1 99.5 GSM292838 18_C211.1L.SLL3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.6 99.4 GSM292852 30_1463.1L.R282L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.0 99.3 GSM292448 49_C110.1G.V7G1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.8 99.3 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
8.0 99.0 GSM308559 Mature Soybean (Glycine max) pollen grains Replicate 2 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
7.5 98.9 GSM294268 23_2428.2I.R297P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.2 98.9 GSM308560 Mature Soybean (Glycine max) pollen grains Replicate 3 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
6.3 98.6 GSM293195 77_1130.1O.R082P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-6 52 GmaAffx.9251.1.S1_at BU548754 - - 1e+0 At3g52130 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.01 8e-2 38 PsAffx.C40000062_at PsAffx.C40000062 - - 8e-1 At5g10400 histone H3 C.G. S.X.
0.01 8e-2 38 PsAffx.C193000007_at PsAffx.C193000007 - - 7e-2 At3g15210 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) C.G. S.X.
0.05 8e-2 38 HgAffx.3816.1.A1_at CK348874 - - 7e-1 At1g24350 - C.G. S.X.
0.03 8e-2 38 Gma.4560.1.S1_at CD393558 - - 2e-12 At1g01250 AP2 domain-containing transcription factor, putative C.G. S.X.
0.04 3e-1 36 GmaAffx.54405.1.S1_at BI974990 - - 1e+0 At1g78410 VQ motif-containing protein C.G. S.X.
0.02 1e+0 34 PsAffx.C27000012_at PsAffx.C27000012 - - 1e+1 At4g18930 cyclic phosphodiesterase C.G. S.X.
0.04 1e+0 34 GmaAffx.85883.1.S1_at CA935724 - - 3e-19 At5g06390 FLA17 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR) C.G. S.X.
0.01 5e+0 32 PsAffx.C8000068_at PsAffx.C8000068 - - 4e+0 At4g24026 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-5 50 Arabidopsis thaliana At5g58930 836010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFM - - - C.G. S.X.
0.06 4e-1 34 Hordeum vulgare Contig3871_at Contig3871 - - 3e-41 At5g20570 RBX1 (RING-BOX 1) C.G. S.X.
0.05 4e-1 36 Oryza sativa OsAffx.5099.1.S1_at - - - 0 C.G. S.X.
0.11 5e-6 52 Populus trichocarpa PtpAffx.200751.1.S1_at pmrna1452 hypothetical protein - 4e-9 At3g46990 unknown protein C.G. S.X.
0.04 2e-1 36 Triticum aestivum TaAffx.131298.1.S1_at CA598775 - - 3e-3 At1g75550 glycine-rich protein C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1608717_at CF568867 - - 2e-63 At2g33430 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) C.G. S.X.
0.03 1e+0 32 Zea mays Zm.4471.5.A1_at BF729171 protein kinase APK1B - 2e-2 At3g47510 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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