CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.27378.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.65 83.8 GmaAffx.27378.1.S1_at BG654320 - - 3e-4 At3g16270 - S.X. H.G.
0.50 71.7 GmaAffx.92769.1.S1_at CF808494 - - 1e-75 At3g19760 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative S.X. H.G.
0.39 54.5 GmaAffx.92769.1.S1_s_at CF808494 - - 1e-75 At3g19760 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative S.X. H.G.
0.38 53.3 GmaAffx.91054.1.S1_at CF806779 - - 2e-8 At1g04230 unknown protein S.X. H.G.
0.33 46.1 GmaAffx.89144.1.A1_s_at CK605580 - - 2e-21 At3g60600 VAP (VESICLE ASSOCIATED PROTEIN) S.X. H.G.
0.27 35.7 GmaAffx.82598.2.S1_at BM143186 - - 8e-8 At5g59830 unknown protein S.X. H.G.
0.26 33.9 Gma.8087.2.S1_a_at BM520889 - - 1e+0 At1g26690 emp24/gp25L/p24 family protein S.X. H.G.
0.25 32.6 GmaAffx.55210.2.S1_at BE330623 - - 3e-32 At2g43070 protease-associated (PA) domain-containing protein S.X. H.G.
0.21 26.6 Gma.10798.1.S1_at CD401168 - - 2e-158 At1g10430 PP2A-2 S.X. H.G.
0.20 25.1 GmaAffx.85246.2.S1_at BM954924 - - 2e-9 At5g14250 COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.6 99.1 GSM209591 mock_0hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.8 97.9 GSM209596 resistant_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.1 97.3 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
4.1 97.3 GSM209597 susceptible_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.0 97.2 GSM209585 resistant_12hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.8 97.0 GSM209594 resistant_12hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.7 96.8 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.7 96.8 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.4 96.4 GSM209578 resistant_24hours_rep1 failed QC GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.3 96.2 GSM293877 29_3084.2E.R9E2P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1132 GmaAffx.27378.1.A1_at AI736521 - - 3e-4 At3g16270 - C.G. S.X.
0.14 1e-47 190 Gma.5774.1.S1_at BG511460 - - 2e+0 At3g60060 - C.G. S.X.
0.26 3e-14 79 GmaAffx.82676.1.S1_at BM271388 - - 1e+0 At2g40435 - C.G. S.X.
0.03 1e-1 38 GmaAffx.72693.1.S1_at BG404878 - - 2e-45 At5g56750 Ndr family protein C.G. S.X.
0.03 2e+0 34 HgAffx.18267.1.S1_at CD747808 - - 3e-4 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) C.G. S.X.
0.04 2e+0 34 GmaAffx.18348.1.S1_at BI317548 - - 9e-1 At3g46940 deoxyuridine 5'-triphosphate nucleotidohydrolase family C.G. S.X.
0.01 2e+0 34 Gma.8426.1.S1_at D13505.1 early nodulin - 2e-2 At3g15990 SULTR3 C.G. S.X.
0.01 6e+0 32 PsAffx.C133000036_s_at PsAffx.C133000036 - - 5e-3 At1g51405 myosin-related C.G. S.X.
0.01 6e+0 32 PsAffx.C111000060_at PsAffx.C111000060 - - 3e+0 At1g78172 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-4 46 Arabidopsis thaliana At3g16270 820873 - F:unknown;P:intracellular protein transport;C:membrane;MOPBF - - - C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig26247_at Contig26247 - - 2e+0 At5g19970 unknown protein C.G. S.X.
0.03 6e-1 36 Oryza sativa Os08g0417100 CR283653 - Isopenicillin N synthase family protein 4e+0 At5g43850 ARD4 C.G. S.X.
0.06 1e-4 48 Populus trichocarpa PtpAffx.200640.1.S1_at pmrna1245 hypothetical protein - 3e-17 At3g16270 - C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.13298.1.S1_at BG909604 - - 3e+0 At5g01440 insulin-degrading enzyme-related C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1615854_at CF512129 hypothetical protein LOC100266517 - 3e-1 At5g23950 C2 domain-containing protein C.G. S.X.
0.03 1e-1 36 Zea mays Zm.11570.1.A1_at CF057654 - - 1e+0 At5g05550 transcription factor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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