Gene omics information

Query gene ID	GmaAffx.27367.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.3	GmaAffx.27367.1.S1_at	BG653618	-	-	7e-9	At1g79690	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	S.X.	H.G.	Please select
0.60	80.7	Gma.8209.1.S1_at	BU546771	-	-	2e-47	At5g58100	unknown protein	S.X.	H.G.	Please select
0.50	71.7	Gma.4214.1.S1_at	CD418435	mitogen-activated protein kinase 2	-	5e-70	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.56409.1.S1_at	BU965321	-	-	1e-16	At1g08750	GPI-anchor transamidase, putative	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.37668.2.S1_at	BF424937	-	-	8e-21	At3g51050	FG-GAP repeat-containing protein	S.X.	H.G.	Please select
0.44	63.3	Gma.11094.2.S1_a_at	BU546011	-	-	1e-10	At2g14835	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.6	94.5	GSM293377	62_1573.1Q.R160L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293605	35_2091.2B.R298U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.3	93.3	GSM293614	43_2066.2B.R129P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293771	17_2159.2D.R076L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293601	31_2069.2B.R213L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293545	5_3015.2A.V7A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293402	85_1563.1Q.R151U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293228	17_1198.1P.R122P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293310	91_1180.1P.R110P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-3	44	Gma.6857.3.S1_at	BQ629649	-	-	8e-1	At4g24730	calcineurin-like phosphoesterase family protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.psMA013xP14f_at	PsAffx.psMA013xP14f	-	-	1e+0	At3g15534	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C66000065_at	PsAffx.C66000065	-	-	1e+0	At4g34460	AGB1 (GTP BINDING PROTEIN BETA 1)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C18000089_at	PsAffx.C18000089	-	-	9e-7	At4g18730	RPL16B	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.92645.1.S1_s_at	CF808370	-	-	2e-21	At4g24380	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.85195.1.S1_at	BE021751	-	-	3e+0	At2g27250	CLV3 (CLAVATA3)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.66428.1.S1_at	AW132856	-	-	8e-1	At1g78430	-	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.65998.1.S1_at	BI786665	-	-	1e-21	At1g12360	KEU (keule)	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.28511.1.S1_at	BM953949	-	-	2e-2	At3g48040	ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	7e-9	61	Arabidopsis thaliana	At1g79690	844308	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	F:hydrolase activity;P:unknown;C:cytosol, vacuole;BOPFMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	9e-16	83	Hordeum vulgare	Contig8297_at	Contig8297	-	-	2e-24	At1g79690	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	C.G.	S.X.	Please select
0.19	4e-15	83	Oryza sativa	Os02g0793300	AK072317.1	-	Isopentenyl-diphosphate delta-isomerase familyprotein	2e-21	At1g79690	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	7e-62	238	Populus trichocarpa	PtpAffx.5195.1.S1_at	CV262828	-	-	4e-34	At1g79690	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	8e-12	71	Triticum aestivum	TaAffx.7306.1.S1_at	CA604087	-	-	7e-3	At1g79690	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1611341_at	CF210963	-	-	4e+0	At5g38360	catalytic	C.G.	S.X.	Please select
0.03	7e-1	34	Zea mays	Zm.15196.1.A1_at	BM334170	-	-	2e+1	At5g65158	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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