Gene omics information

Query gene ID	GmaAffx.26700.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.26700.2.S1_at	BE211421	-	-	3e+0	At4g29930	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.14	17.5	PsAffx.psHB012xF21f_s_at	PsAffx.psHB012xF21f	-	-	9e-25	At2g19520	FVE	S.X.	H.G.	Please select
0.10	13.0	Gma.2819.2.S1_at	BG510963	-	-	4e-16	At1g72550	tRNA synthetase beta subunit family protein	S.X.	H.G.	Please select
0.10	13.0	GmaAffx.91918.1.S1_at	CF807643	-	-	4e-149	At1g56070	LOS1	S.X.	H.G.	Please select
0.04	7.0	GmaAffx.90608.1.S1_s_at	CF806333	-	-	5e-102	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	S.X.	H.G.	Please select
0.03	5.8	Gma.5672.9.S1_at	AW781478	-	-	2e-102	At1g54270	EIF4A-2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.9	99.7	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
13.0	99.5	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
10.9	99.4	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
8.9	99.2	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
6.7	98.7	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM209595	susceptible_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.8	97.9	GSM292959	38_C232.1M.R9M3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.7	97.8	GSM244824	20_V71.I1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.6	97.7	GSM292752	16_1442.1K.R270P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-25	115	GmaAffx.26700.1.S1_at	BI094913	-	-	5e-85	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C38000117_at	PsAffx.C38000117	-	-	2e+0	At3g10020	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.80651.1.S1_at	BE021111	-	-	9e-7	At3g63130	RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1)	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.10603.1.S1_at	BU577478	-	-	3e+0	At3g13780	-	C.G.	S.X.	Please select
0.03	1e+0	34	Gma.16344.1.A1_at	CD415534	-	-	6e+0	At5g58030	transport protein particle (TRAPP) component Bet3 family protein	C.G.	S.X.	Please select
0.03	5e+0	32	PsAffx.psZO006iG11r_at	PsAffx.psZO006iG11r	-	-	4e+0	At2g23130	AGP17 (ARABINOGALACTAN PROTEIN 17)	C.G.	S.X.	Please select
0.03	5e+0	32	PsAffx.CL2189Contig1_at	PsAffx.CL2189Contig1	-	-	5e+0	At5g64130	-	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C5000123_s_at	PsAffx.C5000123	-	-	5e+0	At5g04430	BTR1L (BINDING TO TOMV RNA 1L (LONG FORM))	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C38000118_at	PsAffx.C38000118	-	-	4e-1	At1g13960	WRKY4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At4g29930	829116	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMVBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	30	Hordeum vulgare	Contig14890_at	Contig14890	-	-	5e-2	At2g18320	-	C.G.	S.X.	Please select
0.05	1e-1	38	Oryza sativa	Os11g0602700	9639.m03542	-	-	7e-1	At1g58150	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.93776.1.S1_s_at	BP929669	-	-	3e-1	At1g01310	allergen V5/Tpx-1-related family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-1	36	Triticum aestivum	TaAffx.82855.1.S1_at	CA665883	-	-	2e-1	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1617046_at	CF512505	hypothetical protein LOC100244517	-	2e-1	At1g68160	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zea mays	Zm.9111.2.A1_a_at	BM266662	flavoprotein wrbA	-	3e-1	At4g27270	quinone reductase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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