CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.26135.1.A1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 GmaAffx.26135.1.A1_at AW707277 - - 4e-12 At3g04720 PR4 (PATHOGENESIS-RELATED 4) S.X. H.G.
0.60 80.7 Gma.1608.1.A1_at BE658702 - - 3e+0 At4g22440 unknown protein S.X. H.G.
0.38 53.3 Gma.1622.1.A1_s_at BU090523 - - 3e-1 At4g25680 unknown protein S.X. H.G.
0.38 53.3 GmaAffx.82269.1.S1_s_at BI788213 - - 1e-2 At1g68190 zinc finger (B-box type) family protein S.X. H.G.
0.29 39.0 Gma.4094.1.S1_at BI701231 - - 1e+1 At5g42895 - S.X. H.G.
0.23 29.9 GmaAffx.46129.1.S1_at BI892562 - - 5e-6 At5g40780 LHT1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
86.9 100.0 GSM293197 79_C053.1O.R9O3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
35.8 99.9 GSM293113 28_C047.1O.R9O2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
34.1 99.9 GSM292386 60_1231.1F.R142U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
27.4 99.8 GSM293015 20_1089.1N.R055L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
26.6 99.8 GSM292240 49_C033.1B.R9B3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
23.7 99.8 GSM293938 84_3083.2E.R9E2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
22.7 99.8 GSM293294 77_C067.1P.R9P3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
22.6 99.8 GSM292292 39_C075.1E.R9E1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
21.8 99.8 GSM294092 4_3111.2G.R9G1L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
20.6 99.7 GSM294047 96_3095.2F.R9F1L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 2e-70 266 GmaAffx.92499.1.S1_s_at CF809203 Win gene encoding wound-induced protein - 2e-15 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.06 8e-8 57 GmaAffx.52146.1.S1_at CA934966 - - 2e-4 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.02 2e-2 40 PsAffx.C54000080_at PsAffx.C54000080 - - 1e+1 At5g56550 OXS3 (OXIDATIVE STRESS 3) C.G. S.X.
0.01 5e+0 32 PsAffx.C2000077_at PsAffx.C2000077 - - 2e-1 At5g50080 DNA binding / transcription factor C.G. S.X.
0.01 5e+0 32 PsAffx.C144000045_at PsAffx.C144000045 - - 3e+0 At5g63460 SAP domain-containing protein C.G. S.X.
0.01 5e+0 32 PsAffx.C103000054_at PsAffx.C103000054 - - 1e+0 At1g09625 unknown protein C.G. S.X.
0.03 5e+0 32 Gma.3912.1.S1_at CD417964 - - 1e-19 At4g38890 dihydrouridine synthase family protein C.G. S.X.
0.02 5e+0 32 Gma.17298.2.S1_at CA785058 - - 9e-21 At2g32040 integral membrane transporter family protein C.G. S.X.
0.02 5e+0 32 Gma.17298.2.S1_a_at CA785058 - - 9e-21 At2g32040 integral membrane transporter family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 4e-12 71 Arabidopsis thaliana At3g04720 819632 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. - - - C.G. S.X.
0.07 2e+0 32 Hordeum vulgare HV_CEa0012K03r2_x_at HV_CEa0012K03r2 - - 3e+0 At2g07215 unknown protein C.G. S.X.
0.04 2e+0 34 Oryza sativa Os08g0343500 9636.m02500 - - 9e-1 At5g39310 ATEXPA24 (ARABIDOPSIS THALIANA EXPANSIN A24) C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.47069.1.A1_at CV238066 hypothetical protein - 2e-6 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.04 1e+1 30 Triticum aestivum TaAffx.64769.1.A1_at BJ277094 - - 1e+0 At1g08810 MYB60 (myb domain protein 60) C.G. S.X.
0.09 3e-1 34 Vitis vinifera 1620518_at CF201341.1 - - 9e-14 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.03 2e+1 28 Zea mays Zm.5652.1.A1_at AI629811 CCT motif family protein - 7e-2 At3g07650 COL9 (CONSTANS-LIKE 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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