Gene omics information

Query gene ID	GmaAffx.25724.3.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	82.9	GmaAffx.25724.3.S1_at	BE331279	-	-	6e-2	At3g14680	CYP72A14	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.53002.1.S1_at	AW459228	-	-	6e-8	At5g49730	ATFRO6 (FERRIC REDUCTION OXIDASE 6)	S.X.	H.G.	Please select
0.65	83.8	GmaAffx.80460.1.S1_at	BG047325	-	-	3e+0	At1g21500	unknown protein	S.X.	H.G.	Please select
0.56	78.2	GmaAffx.44426.1.S1_at	BE346365	-	-	6e-8	At2g30950	VAR2 (VARIEGATED 2)	S.X.	H.G.	Please select
0.55	76.3	Gma.10896.2.S1_at	BM954809	-	-	2e-25	At2g24270	ALDH11A3	S.X.	H.G.	Please select
0.51	72.3	GmaAffx.83362.1.S1_at	AW119427	-	-	2e-9	At5g20140	SOUL heme-binding family protein	S.X.	H.G.	Please select
0.50	71.7	Gma.15039.2.S1_at	BQ094874	-	-	1e+1	At5g12140	ATCYS1 (A. thaliana cystatin-1)	S.X.	H.G.	Please select
0.48	67.7	Gma.12578.1.S1_at	CD391694	-	-	3e-44	At5g58140	PHOT2 (PHOTOTROPIN 2)	S.X.	H.G.	Please select
0.48	67.7	GmaAffx.12286.2.S1_at	BM108265	-	-	1e-11	At5g38510	rhomboid family protein	S.X.	H.G.	Please select
0.47	66.6	GmaAffx.67157.1.S1_at	BE346592	-	-	3e-16	At2g30950	VAR2 (VARIEGATED 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
288.2	100.0	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
276.4	100.0	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
271.2	100.0	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
215.1	100.0	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
204.3	100.0	GSM170928	V2 Control, biological rep3	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
155.0	100.0	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
150.0	100.0	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
136.4	100.0	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
118.5	100.0	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
113.5	100.0	GSM170927	Rust Innoculated, biological rep2	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.70	0	658	GmaAffx.67417.1.S1_at	BE191495	-	-	4e-1	At3g14610	CYP72A7	C.G.	S.X.	Please select
0.34	5e-40	165	GmaAffx.67602.1.S1_at	BM893161	-	-	2e-2	At1g22890	unknown protein	C.G.	S.X.	Please select
0.45	2e-39	163	GmaAffx.55387.1.S1_at	AW507640	-	-	6e-3	At3g14640	CYP72A10	C.G.	S.X.	Please select
0.40	8e-36	151	GmaAffx.78313.1.S1_at	BM520482	-	-	3e-1	At1g53760	unknown protein	C.G.	S.X.	Please select
0.08	6e-15	81	Gma.16927.1.S1_at	BU547320	-	-	5e-1	At3g14680	CYP72A14	C.G.	S.X.	Please select
0.03	8e-2	38	GmaAffx.77177.1.S1_at	BE023016	-	-	5e-1	At2g20720	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.03	8e-2	38	GmaAffx.69337.1.S1_at	BG154943	-	-	2e-6	At5g60410	SIZ1	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.80731.1.S1_at	BE475096	-	-	1e-2	At2g42570	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	Gma.12960.1.S1_at	CD402220	-	-	2e+0	At5g06790	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	6e-2	38	Arabidopsis thaliana	At3g14680	820696	CYP72A14	putative cytochrome P450	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	32	Hordeum vulgare	HY07C01u_at	HY07C01u	-	-	5e-2	At1g69780	ATHB13	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	Os03g0371300	NM_184936.1	-	Cytochrome P450 family protein	1e+0	At5g35120	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-7	56	Populus trichocarpa	PtpAffx.209960.1.S1_s_at	pmrna19645	cytochrome P450 /// cytochrome P450	-	2e-4	At1g11610	CYP71A18	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.7777.1.S1_at	CA650066	-	-	3e-3	At3g01310	acid phosphatase/ oxidoreductase/ transition metal ion binding	C.G.	S.X.	Please select
0.07	2e-5	48	Vitis vinifera	1619578_at	CB342051	hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392	-	6e-3	At3g14620	CYP72A8	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.11802.2.A1_at	BM380871	-	-	1e+0	At5g25940	early nodulin-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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