Gene omics information

Query gene ID	GmaAffx.25445.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.25445.1.S1_at	AW156230	-	-	9e-10	At5g01990	auxin efflux carrier family protein	S.X.	H.G.	Please select
0.27	35.7	Gma.8773.1.S1_at	BE657861	-	-	1e-21	At3g43220	phosphoinositide phosphatase family protein	S.X.	H.G.	Please select
0.26	33.9	GmaAffx.16182.1.S1_s_at	AW508093	-	-	4e+0	At5g18150	unknown protein	S.X.	H.G.	Please select
0.26	33.9	Gma.3583.1.S1_at	BI974551	-	-	3e-9	At4g23630	BTI1 (VIRB2-INTERACTING PROTEIN 1)	S.X.	H.G.	Please select
0.25	32.6	Gma.6920.1.S1_s_at	BE610331	-	-	2e+0	At4g07675	unknown protein	S.X.	H.G.	Please select
0.22	28.1	Gma.4171.1.S1_at	CD401267	-	-	1e-79	At5g17060	ATARFB1B	S.X.	H.G.	Please select
0.20	25.1	Gma.7062.1.S1_at	AW734156	-	-	2e-26	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	S.X.	H.G.	Please select
0.19	23.7	Gma.8018.1.S1_at	CD409445	-	-	3e-17	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	S.X.	H.G.	Please select
0.19	23.7	Gma.6005.1.A1_at	BM188184	-	-	3e-1	At5g61510	NADP-dependent oxidoreductase, putative	S.X.	H.G.	Please select
0.17	21.2	Gma.3680.1.A1_at	CD396844	-	-	2e-6	At1g07705	transcription regulator	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
135.6	100.0	GSM201124	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
96.7	100.0	GSM201125	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
26.9	99.8	GSM201129	Whole Seed at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
20.0	99.7	GSM201121	Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
17.5	99.7	GSM182033	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
17.1	99.7	GSM201115	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
17.1	99.7	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
15.0	99.6	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
14.9	99.6	GSM201123	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
14.8	99.6	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-2	38	GmaAffx.28102.1.S1_at	BQ453371	-	-	1e-50	At1g20575	dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative	C.G.	S.X.	Please select
0.04	3e-1	36	HgAffx.12802.1.S1_at	CB375180	-	-	4e+0	At4g39200	40S ribosomal protein S25 (RPS25E)	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C74000022_at	PsAffx.C74000022	-	-	1e+1	At5g47830	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C5000114_at	PsAffx.C5000114	-	-	1e-4	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.82994.4.S1_at	AW704318	-	-	9e-7	At3g60070	-	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.71436.1.S1_at	AW733473	-	-	3e-6	At5g60590	yrdC protein-related	C.G.	S.X.	Please select
0.02	1e+0	34	GmaAffx.19760.1.S1_at	BU545333	-	-	2e+0	At5g02840	LCL1 (LHY/CCA1-like 1)	C.G.	S.X.	Please select
0.03	1e+0	34	Gma.5139.1.S1_at	AF243376.1	glutathione S-transferase GST 21	-	3e-2	At3g05270	-	C.G.	S.X.	Please select
0.03	4e+0	32	HgAffx.20014.1.S1_at	CB824365	-	-	1e+0	At1g58055	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	9e-10	63	Arabidopsis thaliana	At5g01990	830729	auxin efflux carrier family protein	F:auxin:hydrogen symporter activity;P:auxin polar transport;C:integral to membrane;FPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	32	Hordeum vulgare	HVSMEn0003K24f2_x_at	HVSMEn0003K24f2	-	-	3e+0	At4g24300	peptidase	C.G.	S.X.	Please select
0.11	7e-9	61	Oryza sativa	Os05g0481900	AK119626.1	-	Auxin Efflux Carrier family protein	1e-9	At5g01990	auxin efflux carrier family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	5e-43	174	Populus trichocarpa	PtpAffx.219829.1.S1_at	pmrna35973	hypothetical protein	-	1e-57	At5g01990	auxin efflux carrier family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	3e-3	42	Triticum aestivum	Ta.12796.1.S1_s_at	BE430492	-	-	8e-16	At5g01990	auxin efflux carrier family protein	C.G.	S.X.	Please select
0.33	2e-32	137	Vitis vinifera	1611919_at	CB919145	hypothetical protein LOC100246780	-	4e-14	At5g01990	auxin efflux carrier family protein	C.G.	S.X.	Please select
0.04	5e+0	30	Zea mays	Zm.16272.1.A1_at	CF028346	-	-	3e+0	At4g11020	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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