Gene omics information

Query gene ID	GmaAffx.25145.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.25145.1.A1_at	AW830552	-	-	2e-23	At1g08560	SYP111 (SYNTAXIN OF PLANTS 111)	S.X.	H.G.	Please select
0.83	92.5	Gma.8420.1.S1_at	D50871.1	mitotic cyclin b1-type	-	2e-4	At4g37490	CYCB1	S.X.	H.G.	Please select
0.60	80.7	Gma.16501.2.S1_at	BG881473	-	-	3e-4	At4g31840	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.8707.1.S1_at	AI443601	-	-	1e+0	At2g27285	unknown protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.6998.1.S1_at	BU551247	-	-	1e+0	At5g50190	-	S.X.	H.G.	Please select
0.37	51.7	Gma.14112.1.A1_at	BE821492	-	-	2e+0	At4g12190	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
81.9	100.0	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
75.8	100.0	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
74.3	100.0	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
74.0	100.0	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
67.4	100.0	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
67.2	100.0	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
64.5	99.9	GSM258500	Soybean shoot apical meristem, 6 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
64.0	99.9	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
63.6	99.9	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
62.5	99.9	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	813	GmaAffx.25145.1.S1_at	AI495848	-	-	2e-23	At1g08560	SYP111 (SYNTAXIN OF PLANTS 111)	C.G.	S.X.	Please select
0.02	8e-2	38	Gma.3892.1.S1_at	BE802013	-	-	5e-29	At2g46920	POL (poltergeist)	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C226000007_at	PsAffx.C226000007	-	-	3e-1	At2g43140	DNA binding / transcription factor	C.G.	S.X.	Please select
0.02	3e-1	36	GmaAffx.27596.1.S1_at	BU545987	-	-	5e-5	At4g27300	S-locus protein kinase, putative	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C5000090_at	PsAffx.C5000090	-	-	3e+0	At5g60850	OBP4	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C46000059_at	PsAffx.C46000059	-	-	1e-1	At1g60090	BGLU4 (BETA GLUCOSIDASE 4)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C47000004_s_at	PsAffx.C47000004	-	-	9e-1	At3g58450	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C30000040_at	PsAffx.C30000040	-	-	9e+0	At5g57640	-	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C105000055_at	PsAffx.C105000055	-	-	7e-1	At4g01940	NFU1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-23	109	Arabidopsis thaliana	At1g08560	837378	SYP111 (SYNTAXIN OF PLANTS 111)	member of SYP11 Gene Family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	3e-2	38	Hordeum vulgare	Contig22370_at	Contig22370	-	-	5e-3	At1g29160	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.05	3e-5	50	Oryza sativa	Os03g0736500	9631.m05153	-	Syntaxin-related protein KNOLLE (Syntaxin 111)(AtSYP111)	4e-5	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	3e-41	169	Populus trichocarpa	PtpAffx.2045.1.S1_at	CK093245	hypothetical protein	-	5e-20	At1g08560	SYP111 (SYNTAXIN OF PLANTS 111)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	6e-2	38	Triticum aestivum	Ta.18977.2.A1_at	CA598072	-	-	1e+1	At5g08160	ATPK3	C.G.	S.X.	Please select
0.04	6e-2	36	Vitis vinifera	1608365_at	CF205987.1	hypothetical protein LOC100265818	-	4e-4	At3g52400	SYP122 (SYNTAXIN OF PLANTS 122)	C.G.	S.X.	Please select
0.04	6e-6	50	Zea mays	Zm.4845.2.S1_at	AI833522	-	-	3e+0	At1g08560	SYP111 (SYNTAXIN OF PLANTS 111)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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