Gene omics information

Query gene ID	GmaAffx.25060.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	76.3	GmaAffx.25060.1.S1_at	CD415199	-	-	3e-1	At5g47650	ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2)	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.90347.1.S1_at	CF806072	-	-	4e+0	At5g35066	unknown protein	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.29692.1.S1_at	AW348396	-	-	3e+0	At4g01700	chitinase, putative	S.X.	H.G.	Please select
0.22	28.1	GmaAffx.636.1.S1_at	BM523305	-	-	1e+0	At3g46900	COPT2	S.X.	H.G.	Please select
0.05	8.0	GmaAffx.32157.1.S1_at	BU547860	-	-	2e-2	At5g44380	FAD-binding domain-containing protein	S.X.	H.G.	Please select
0.03	5.8	Gma.9236.1.S1_at	BG405642	-	-	1e-27	At5g19530	ACL5 (ACAULIS 5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.9	98.8	GSM292685	34_C169.1J.SLJ2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3	98.6	GSM292711	58_1365.1J.R228U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2	98.6	GSM292815	73_C185.1K.SLK1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM292871	48_C205.1L.SLL2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM292905	79_C211.1L.SLL3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM293903	52_3085.2E.SLE3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM292676	26_1389.1J.R243U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM292493	10_C141.1H.SLH3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM292619	48_C153.1I.SLI2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM294702	66_3227.2M.SLM2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	2e-67	256	GmaAffx.90347.1.S1_at	CF806072	-	-	4e+0	At5g35066	unknown protein	C.G.	S.X.	Please select
0.05	2e-3	44	GmaAffx.77256.1.S1_at	BU577239	-	-	7e-8	At4g12720	NUDT7	C.G.	S.X.	Please select
0.02	2e-2	40	GmaAffx.83003.1.S1_at	BU545212	-	-	2e-68	At5g49470	protein kinase family protein	C.G.	S.X.	Please select
0.03	2e-2	40	GmaAffx.76906.1.S1_at	BE819955	-	-	3e-2	At2g21655	unknown protein	C.G.	S.X.	Please select
0.05	2e-2	40	GmaAffx.72737.1.S1_at	BG508253	-	-	1e-1	At3g15040	unknown protein	C.G.	S.X.	Please select
0.04	2e-2	40	GmaAffx.25840.1.A1_at	CD402384	-	-	3e+0	At2g03130	ribosomal protein L12 family protein	C.G.	S.X.	Please select
0.04	2e-2	40	Gma.4836.1.S1_s_at	BI969339	-	-	3e-10	At1g61700	DNA-directed RNA polymerase II, putative (RPB10)	C.G.	S.X.	Please select
0.04	9e-2	38	GmaAffx.79584.2.S1_s_at	BG042813	-	-	8e-7	At4g33945	armadillo/beta-catenin repeat family protein	C.G.	S.X.	Please select
0.03	9e-2	38	GmaAffx.54536.1.S1_at	BU549725	-	-	2e+0	At2g38600	acid phosphatase class B family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-1	36	Arabidopsis thaliana	At5g47650	834816	ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2)	Encodes an ADP-ribose pyrophosphatase that confers enhanced tolerance to oxidative stress.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-4	44	Hordeum vulgare	Contig9360_at	Contig9360	-	-	1e+0	At4g12720	NUDT7	C.G.	S.X.	Please select
0.07	6e-10	65	Oryza sativa	Os06g0634300	AK070867.1	-	Growth factor like protein	4e-2	At4g12720	NUDT7	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	7e-15	81	Populus trichocarpa	PtpAffx.211932.1.S1_at	pmrna23430	hypothetical protein	-	6e-6	At4g12720	NUDT7	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	1e-9	63	Triticum aestivum	TaAffx.85132.1.S1_at	CA625331	-	-	3e+0	At2g04430	atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5)	C.G.	S.X.	Please select
0.13	2e-14	77	Vitis vinifera	1620455_at	CF204565.1	-	-	3e-1	At4g25434	ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10)	C.G.	S.X.	Please select
0.05	5e-1	34	Zea mays	ZmAffx.171.1.A1_at	AI668231	hypothetical protein LOC100192595	-	3e+0	At1g51160	synbindin, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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