CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.24666.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 GmaAffx.24666.1.S1_at CA783210 - - 2e-1 At2g39705 RTFL8 (ROTUNDIFOLIA LIKE 8) S.X. H.G.
0.50 71.7 GmaAffx.92861.1.S1_s_at CF808586 - - 8e-2 At1g20693 HMGB2 (HIGH MOBILITY GROUP B 2) S.X. H.G.
0.46 65.5 Gma.11341.3.S1_s_at BM177332 - - 8e-26 At4g17900 zinc-binding family protein S.X. H.G.
0.40 57.1 GmaAffx.65140.1.S1_at BI700031 - - 7e-2 At4g33670 L-galactose dehydrogenase (L-GalDH) S.X. H.G.
0.33 46.1 PsAffx.psHA006iH10r_s_at PsAffx.psHA006iH10r - - 1e+0 At2g28140 unknown protein S.X. H.G.
0.10 13.0 Gma.15087.2.S1_at CA800369 - - 1e-94 At4g28860 ckl4 (Casein Kinase I-like 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.2 98.1 GSM292596 26_C146.1I.V7I1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1 98.1 GSM293911 5_2236.2E.R249P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9 98.0 GSM293393 77_C086.1Q.SLQ3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8 97.9 GSM293608 38_2088.2B.R293P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7 97.8 GSM292675 25_1402.1J.R249P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM292653 7_C156.1I.V7I2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5 97.7 GSM292617 46_C150.1I.SLI1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM293565 78_2006.2A.R146P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM293859 12_2234.2E.R077P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM294130 84_2328.2G.R265P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 36 GmaAffx.25178.1.S1_at CD417175 - - 4e-5 At5g05450 DEAD/DEAH box helicase, putative (RH18) C.G. S.X.
0.02 1e+0 34 Gma.5620.1.S1_at BM139729 - - 2e+0 At3g03830 auxin-responsive protein, putative C.G. S.X.
0.04 5e+0 32 PsAffx.psZS004xG15f_at PsAffx.psZS004xG15f - - 2e-1 At3g15900 unknown protein C.G. S.X.
0.04 5e+0 32 PsAffx.psZS004xG15f_s_at PsAffx.psZS004xG15f - - 2e-1 At3g15900 unknown protein C.G. S.X.
0.01 5e+0 32 PsAffx.C244000015_at PsAffx.C244000015 - - 3e+0 At1g16730 unknown protein C.G. S.X.
0.03 5e+0 32 GmaAffx.91678.1.S1_s_at CF807327 - - 1e+0 At3g10570 CYP77A6 C.G. S.X.
0.04 5e+0 32 GmaAffx.82916.1.S1_at BM885990 - - 2e-13 At5g26660 ATMYB86 (MYB DOMAIN PROTEIN 86) C.G. S.X.
0.04 5e+0 32 GmaAffx.65172.1.S1_at BU082843 MYB transcription factor MYB67 - 4e-12 At5g65230 AtMYB53 (myb domain protein 53) C.G. S.X.
0.04 5e+0 32 GmaAffx.5639.1.S1_at BQ298808 - - 3e+0 At3g15840 PIFI (post-illumination chlorophyll fluorescence increase) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 36 Arabidopsis thaliana At2g39705 818554 RTFL8 (ROTUNDIFOLIA LIKE 8) F:molecular_function unknown;P:shoot development;C:chloroplast;P - - - C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HZ37L01r_at HZ37L01r - - 2e+0 At2g03230 - C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.5946.1.S1_at - - - 0 C.G. S.X.
0.29 6e-21 101 Populus trichocarpa PtpAffx.249.211.A1_at CV267864 hypothetical protein - 5e-7 At4g32250 protein kinase family protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.25868.1.S1_at CA694877 - - 2e+0 At3g61200 thioesterase family protein C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1614695_at CB980641 - - 1e+0 At4g08485 - C.G. S.X.
0.03 4e-1 34 Zea mays Zm.7597.1.A1_at BM079101 - - 7e-2 At2g39705 RTFL8 (ROTUNDIFOLIA LIKE 8) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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