Gene omics information

Query gene ID	GmaAffx.24635.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	76.3	GmaAffx.24635.1.A1_at	CD418601	-	-	9e-23	At5g23880	CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)	S.X.	H.G.	Please select
0.38	53.3	GmaAffx.17488.1.A1_at	BI967328	-	-	2e-1	At3g18590	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.53026.1.S1_at	BE657268	-	-	9e-8	At1g65280	heat shock protein binding	S.X.	H.G.	Please select
0.27	35.7	Gma.15717.1.A1_at	CD400725	-	-	2e-1	At4g05410	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.12	15.1	GmaAffx.22145.1.S1_at	BE822726	-	-	1e-19	At1g08450	CRT3 (CALRETICULIN 3)	S.X.	H.G.	Please select
0.11	14.2	Gma.5843.2.S1_at	BE824014	-	-	2e-21	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	S.X.	H.G.	Please select
0.08	11.0	Gma.3133.1.S1_at	AJ272035.1	homoglutathione synthetase	-	4e-9	At5g27380	GSH2 (GLUTATHIONE SYNTHETASE 2)	S.X.	H.G.	Please select
0.07	10.2	Gma.5843.1.S1_x_at	CD416491	-	-	2e-22	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
94.6	100.0	GSM201117	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
51.3	99.9	GSM201101	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
45.4	99.9	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
40.0	99.9	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
39.7	99.9	GSM201102	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
38.2	99.9	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
35.6	99.9	GSM201100	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
34.8	99.9	GSM201103	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
34.4	99.9	GSM201116	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
31.0	99.9	GSM201097	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-17	89	GmaAffx.24635.2.S1_at	BU964597	-	-	3e-1	At4g02450	glycine-rich protein	C.G.	S.X.	Please select
0.06	4e-7	56	GmaAffx.87794.1.S1_at	BQ740663	-	-	4e-9	At1g22610	C2 domain-containing protein	C.G.	S.X.	Please select
0.06	4e-7	56	GmaAffx.875.7.A1_s_at	CD404667	-	-	3e-3	At4g32260	ATP synthase family	C.G.	S.X.	Please select
0.05	4e-7	56	GmaAffx.65008.1.S1_at	BQ610652	-	-	9e-1	At3g55330	PPL1 (PsbP-like protein 1)	C.G.	S.X.	Please select
0.06	4e-7	56	GmaAffx.51426.1.S1_at	BQ610762	-	-	8e-1	At3g50925	-	C.G.	S.X.	Please select
0.05	4e-7	56	GmaAffx.2696.2.S1_at	AW759738	-	-	3e-1	At3g61590	HWS (HAWAIIAN SKIRT)	C.G.	S.X.	Please select
0.07	4e-7	56	GmaAffx.13587.1.S1_at	BG654181	-	-	2e+0	At3g54270	sucrose-phosphatase 3 (SPP3)	C.G.	S.X.	Please select
0.03	4e-7	56	Gma.4711.2.S1_at	BU082275	-	-	3e-18	At5g59610	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	4e-7	56	Gma.4711.2.S1_a_at	BU082275	-	-	3e-18	At5g59610	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	9e-23	107	Arabidopsis thaliana	At5g23880	832453	CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)	Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3'end formation apparatus.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-6	52	Hordeum vulgare	rbaal20n01_s_at	rbaal20n01	-	-	4e-1	At3g46160	protein kinase-related	C.G.	S.X.	Please select
0.04	1e-5	52	Oryza sativa	Os09g0569400	AK063384.1	-	RNA-metabolising metallo-beta-lactamase domaincontaining protein	7e-21	At5g23880	CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-7	57	Populus trichocarpa	Ptp.5850.2.A1_at	CV253282	-	-	1e-22	At4g18100	60S ribosomal protein L32 (RPL32A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	8e-8	57	Triticum aestivum	TaAffx.54234.1.S1_at	CA684139	-	-	2e+0	At5g58530	glutaredoxin family protein	C.G.	S.X.	Please select
0.04	6e-6	50	Vitis vinifera	1617182_at	CB921793	-	-	5e-3	At1g62240	unknown protein	C.G.	S.X.	Please select
0.05	2e-6	52	Zea mays	Zm.3801.2.A1_at	AY112091.1	-	-	1e+0	At4g01590	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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