Gene omics information

Query gene ID	GmaAffx.23963.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.23963.1.S1_at	BQ080815	-	-	3e+0	At3g42310	unknown protein	S.X.	H.G.	Please select
0.59	79.5	GmaAffx.82262.1.S1_at	BI786890	-	-	3e-28	At3g51770	ETO1 (ETHYLENE OVERPRODUCER 1)	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.88122.1.S1_at	BM092255	-	-	3e-14	At3g12620	protein phosphatase 2C family protein / PP2C family protein	S.X.	H.G.	Please select
0.40	57.1	Gma.18083.1.S1_at	BG046768	-	-	2e-9	At5g62460	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.86740.1.S1_at	BG510614	-	-	6e-3	At2g37940	-	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.36562.2.S1_at	BM731207	-	-	5e-15	At1g14970	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
971.0	100.0	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
660.4	100.0	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
613.6	100.0	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
1.7	89.2	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
1.2	81.4	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
1.1	78.9	GSM294150	15_3131.2H.R9H1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
0.9	72.7	GSM171720	8_Y.E.I.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
0.9	72.7	GSM171702	4_V.E.I.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
0.9	72.7	GSM171627	17_W.L.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
0.9	72.7	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.70	1e-154	545	GmaAffx.34626.1.S1_at	AW348158	-	-	8e-2	At4g01575	serine protease inhibitor, Kazal-type family protein	C.G.	S.X.	Please select
0.03	7e-2	38	PsAffx.CL650Contig1_at	PsAffx.CL650Contig1	-	-	1e+0	At2g21780	unknown protein	C.G.	S.X.	Please select
0.03	7e-2	38	Gma.547.1.S1_at	CD403975	-	-	2e+0	At5g07190	ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C72000049_at	PsAffx.C72000049	-	-	2e+0	At3g45090	2-phosphoglycerate kinase-related	C.G.	S.X.	Please select
0.03	3e-1	36	PsAffx.C69000089_at	PsAffx.C69000089	-	-	8e+0	At5g11830	-	C.G.	S.X.	Please select
0.03	1e+0	34	PsAffx.CL575Contig1_at	PsAffx.CL575Contig1	-	-	5e-1	At1g64490	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C6000117_at	PsAffx.C6000117	-	-	3e-1	At3g54600	DJ-1 family protein	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C58000024_at	PsAffx.C58000024	-	-	3e+0	At4g22420	-	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C124000035_at	PsAffx.C124000035	-	-	1e+1	At3g47540	chitinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e+0	32	Arabidopsis thaliana	At3g42310	823222	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;VMPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	34	Hordeum vulgare	HW09C22u_at	HW09C22u	-	-	1e+0	At2g19350	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	36	Oryza sativa	Os09g0383800	9637.m01858	-	-	5e+0	At4g09030	AGP10 (ARABINOGALACTAN PROTEIN 10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e+0	34	Populus trichocarpa	PtpAffx.219499.1.S1_at	pmrna35438	hypothetical protein	-	4e+0	At5g06280	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	6e-14	77	Triticum aestivum	TaAffx.52168.1.S1_at	CA712014	-	-	1e+1	At5g58990	unknown protein	C.G.	S.X.	Please select
0.04	6e-2	36	Vitis vinifera	1611824_at	CF405372	-	-	3e+0	Atmg01280	-	C.G.	S.X.	Please select
0.04	3e-1	34	Zea mays	ZmAffx.1421.1.S1_at	40794996-96	-	-	3e+0	At5g52270	vesicle transport protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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